Ttro005481.1
Basic Information
- Insect
- Trachelus troglodyta
- Gene Symbol
- -
- Assembly
- GCA_030142635.1
- Location
- JARQTJ010000385.1:1723724-1727275[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.7e-13 1.1e-09 37.9 0.0 1 39 286 325 286 329 0.90 2 4 2.7e-12 3.5e-09 36.4 0.1 2 39 341 378 340 381 0.94 3 4 9.7e-19 1.3e-15 57.0 0.0 2 45 396 440 395 440 0.97 4 4 1.1e-18 1.5e-15 56.8 0.1 1 42 447 489 447 490 0.97
Sequence Information
- Coding Sequence
- ATGCCCGACCCATACCTAATCCGATGTCTCATTTATAAAGTATCGAAAACTTGTCCTTCTGTGCAGTCCCTGCTTAAGACAGCCGATCAGCTGAAGATCAAGGGTCTTTGCGAAGTGCCAGAGAGCAAGGACGGTCCACCGTCGGTCAGTCTGAGCTCACCAGGTATAGATTCAGGCACACCGCGGCTCAACTACACCAAACTGAAGAGGCACCATCCCAGGTACAAGAGACCCAGGTTTGAGCCTCGAACCGACTCCAGGCATTACGAGCAGTATAAAGAGGAAGAGGCCACCGAGGCCTTTGGTCGTGACGATAAGGAGAATCACAGAGGCTGGCAGACCGAGGATGAAGAGTGCGCGGAGGCCGCAGTAGTCCTGGAGTCCTGCCAACGTGACAACAACAACGGTAACAGTACAAATAACAATAACGGTGACATGTTTTGTCACACAGGGTTAGGTCACTACGGTCATCATCCGGACCCGGGAGAGGTCGATCTACCCCCTGAGACTCAGCCCACACCCCCCAGCGCTACTTTAGTTGGCACCACGATCACCCACCTGAGAGATCCCGATCATCACTCGACAGATATCCAGAATTGCGACAGTGTCAAGATCAAGTTCGAGACTTTGCACACGATGGATTCCTCGGATACGATCGATATCGATAGCCACATGTCGGACAGGGCGAGTGTGAGTTCGAAGAACGCTGTGGATAACGATAATATGATGATGATCACGCCAGAATTATTGGGCCTCATGCCGTCGGGAAGTTCGGTACATTCGGATTCCGGTGAGACAAATGCGAGAGGGCACTCGGGTCAGTCTGGCTCGCATCATCACGGTTCCAAATCTTGGACGCAGGAGGACATGGACGCGGCCTTGGAGGCCCTTAGGAATCACGATATGAGTCTTACAAAGGCATCAGCAACATTCGGTATACCATCTACGACCTTGTGGCAGCGTGCTCATCGTCTTGGGATTGATACTCCAAAAAAGGATGGACCCACCAAATCTTGGAGCGACGAGAGTCTGAACAACGCGCTGGAGGCACTCAGGACCGGTACCATCTCGGCTAACAAGGCTTCAAAGGCCTTTGGCATTCCCTCGAGCACCCTGTACAAAATTGCTAGGAGAGAGGGTATCAGATTAGCTGCTCCCTTCAACGCGAGCCCCACCACTTGGTCTCCTGCCGACCTGGACAGAGCCCTCGAGGCAATAAGGTCCGGTCAGACGTCGGTGCAAAGAGCTTCGACCGAGTTTGGAATTCCTACAGGAACTCTATACGGGAGATGCAAGAGGGAAGGCATCGAGCTCAGCAGAAGCAATCCGACGCCTTGGAGCGAGGACGCCATGACGGAGGCTTTGGAAGCCGTTCGGTTGGGTCACATGAGCATCAACCAAGCAGCCATTCACTATAATTTACCATATTCATCCCTTTATGGACGATTCAAGAGAGGGAAGTACGAAGAACCTGTTGTCAGTGAAATGTCTCAAGATGGCGGCAGTCCTCACTATCATCAGAGTCCTAATCAGAATCACTCCACTTCTCTCCCCGATCAAATGCCTTATCAGGGCAGCTGA
- Protein Sequence
- MPDPYLIRCLIYKVSKTCPSVQSLLKTADQLKIKGLCEVPESKDGPPSVSLSSPGIDSGTPRLNYTKLKRHHPRYKRPRFEPRTDSRHYEQYKEEEATEAFGRDDKENHRGWQTEDEECAEAAVVLESCQRDNNNGNSTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAVDNDNMMMITPELLGLMPSGSSVHSDSGETNARGHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVSEMSQDGGSPHYHQSPNQNHSTSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00292363;
- 90% Identity
- iTF_00292363;
- 80% Identity
- -