Basic Information

Insect: Trachelus tabidus
Gene Symbol: -
Assembly: GCA_030142655.1
Location: JARQTI010000454.1:87369-88385[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 6.9e-06 0.00059 20.5 2.6 1 23 63 85 63 85 0.97

2 8 3.4e-05 0.0029 18.4 1.3 1 23 87 110 87 110 0.95

3 8 0.00054 0.046 14.6 0.2 1 23 115 138 115 138 0.95

4 8 2.8e-06 0.00024 21.8 1.0 1 23 144 167 144 167 0.97

5 8 0.00051 0.044 14.6 2.2 1 23 200 222 200 222 0.98

6 8 8.9e-06 0.00077 20.2 0.4 2 23 229 250 229 250 0.97

7 8 2.8e-06 0.00024 21.8 0.0 1 23 256 278 256 278 0.97

8 8 0.00035 0.03 15.2 0.7 1 23 284 306 284 306 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	6.9e-06	0.00059	20.5	2.6	1	23	63	85	63	85	0.97
2	8	3.4e-05	0.0029	18.4	1.3	1	23	87	110	87	110	0.95
3	8	0.00054	0.046	14.6	0.2	1	23	115	138	115	138	0.95
4	8	2.8e-06	0.00024	21.8	1.0	1	23	144	167	144	167	0.97
5	8	0.00051	0.044	14.6	2.2	1	23	200	222	200	222	0.98
6	8	8.9e-06	0.00077	20.2	0.4	2	23	229	250	229	250	0.97
7	8	2.8e-06	0.00024	21.8	0.0	1	23	256	278	256	278	0.97
8	8	0.00035	0.03	15.2	0.7	1	23	284	306	284	306	0.98

Sequence Information

Coding Sequence: ATGCTGCCGGGACGAGGATCGAGTTCCGAGGAACCCAAGGCCAAGCGGAAGATCAAGCGAAGAGTGGCCCCCAACGAGTTCTTCGTGGTTAAACGCGGAAGAAAGCTTGTTGGCGAAAGTagaaatggaaatggaaatggaaatgGAGCTGCAAGTGACAGCAGCGTCATCGGTTGTGCCAGAAGTTATTGTTGCGACTTCTGCGGCAATAGTTTTCCAACGAAGAAGGAACTCGTTCGTCACATGAAGCTCCACAAGTACGTCTGCGACATTTGCGACAACAAGTTCCATCGGAGAAGTGAACTTAGGAATCACGTGGCTTCGACTCATGGACCGGAGAAGTATCCCTGCGACGTCTGTGACTACGTCAGCCGAAACAAGTGGGCCCTGCAGGACCACTTTATTCGCAAACATACCGATGGCTTCAACTTCGCGTGCAAGCTCTGCGGAAAGGAgttcaaaataaagaatgacTTGCAAACTCACATGAATCGCAGTCACAGCGACGTGTGCGTCGTGTGCGACGTTTGCGGACACACGAACAAGAGTATCCACGCGCTTAAATGCCACAAGAAGTATGCGCATTACAAGCCCAAATTCGAGTGCAAGCTCTGCAAGCGCAGGATGACTACGCAGGAGTATCTCGATAAGCACATGCTGCGTCACGAGACCAAGGAGAGAAACGTCTGTCCGACTTGTGGCAAGACCTTCTGCGAGAAATACGCGCTCGATGTCCACCTAATGATTCACACGGGAGTGAAGCCTTTCGCTTGTCCCGTATGCGGCAAAGCATTCTCAAGGCAGACCGCTCAGGAGCAACACATTCTTATTCACATGGGCAAGAGACCCTACACCTGCGACGTCTGCGGGCAGGCCTTCGCCCAGAAGCCGGGACTCATCTGCCATCGGAAACGTCATCCCGGGCCCCTTCCACCCCTTCCCGTTGTCTCGGTCAAGAATATCGTCAGCGAGTTCACTAGAGAATACGTCAGGAAGAATCAGACTGTTGCTCAATAA
Protein Sequence: MLPGRGSSSEEPKAKRKIKRRVAPNEFFVVKRGRKLVGESRNGNGNGNGAASDSSVIGCARSYCCDFCGNSFPTKKELVRHMKLHKYVCDICDNKFHRRSELRNHVASTHGPEKYPCDVCDYVSRNKWALQDHFIRKHTDGFNFACKLCGKEFKIKNDLQTHMNRSHSDVCVVCDVCGHTNKSIHALKCHKKYAHYKPKFECKLCKRRMTTQEYLDKHMLRHETKERNVCPTCGKTFCEKYALDVHLMIHTGVKPFACPVCGKAFSRQTAQEQHILIHMGKRPYTCDVCGQAFAQKPGLICHRKRHPGPLPPLPVVSVKNIVSEFTREYVRKNQTVAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00297799;
90% Identity: iTF_00297799;
80% Identity: -