Ttab005609.1
Basic Information
- Insect
- Trachelus tabidus
- Gene Symbol
- -
- Assembly
- GCA_030142655.1
- Location
- JARQTI010000420.1:2445984-2448325[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3.9 3.4e+02 2.4 0.7 2 23 218 241 217 241 0.85 2 10 1.1 94 4.2 5.9 1 23 247 269 242 269 0.89 3 10 5.9e-05 0.0051 17.6 0.2 1 23 275 297 275 297 0.98 4 10 5.5e-06 0.00048 20.8 3.8 1 23 303 325 303 325 0.97 5 10 2.7e-06 0.00023 21.8 1.4 1 23 334 356 334 356 0.98 6 10 4.2e-05 0.0036 18.1 0.2 1 23 362 384 362 384 0.97 7 10 0.00026 0.022 15.6 1.8 1 23 390 412 390 412 0.96 8 10 0.00039 0.033 15.0 0.8 1 23 418 440 418 440 0.98 9 10 4e-05 0.0034 18.1 2.9 1 23 446 468 446 468 0.98 10 10 3.1e-07 2.7e-05 24.8 3.6 1 23 474 497 474 498 0.97
Sequence Information
- Coding Sequence
- ATGGCCAAGTACACAGCATGTAGACTTTGTAATTCAGCCGCAGACATTtttgttaacatttttaatgaagatGGTATAAGTAGAGATCTTGGTACCAAGATGGCTTCGTGTTTACAGATTTTGGTTTCTTCAGAAGATGCTCTGCCAAAGACTGTTTGTCTGACTTGTTGTAATAAGTTAAATGActtctatgaattttatatcaaatcaCATGAGGTACAAGATTTACTTAAAGACATATATGCATCAAGGGAATGTGTTAAAGAGACACATTCACAATCTGCagatgagaatgaaaaagttacAAAAGTGTTGCAGAACATGAATCAGGATAATAATAGCCCATATAATATTGCAGAAGGTGCTAAAGATGAGATAAAATGTATCGAAGGcctagaaaatataaattcagaTAAGAATACAGAATGTCCGTCAGTCGTGAACGTAAATAAGGAAAAGGATGTcgagatagaaataaaagaatttaaaacaTCATCATGGATGAAAACAGAAAGTGAGAGTGACAAAGAGGATGATCCACATCCCTCAAGTTCTTTGCAGACTGAAGAGCATAATCCTAAAAAAGATCCAAACTTAAATGAAACTCCAGTGAATCCTTCTCAGACAGGAATACTAGATGGGTATCCATGGACATGCACGATATGCACTGACGTAGTGGTCGATAACGCTCAGGAATTATGCaaacattataaatttcaacattttcaatgtGCAGTCTTCCGATGCATTCACTGCGAAAAGCAATACGATCGTTATAGAAGTTTCGTAAGACATTTCAAGCAGCATTTCGATCCTAAAGAATACacatGTGATATTTGCGGTAAATCATTTGCACTAAAGACAATATTAAGATCACATGCAAGAGTTCACAGCAATGACAGACCACATGTGTGTAAAGTCTGTGGAAAATCCTTTAAAAACTACTATTCTTTAACTGTGCATAACAAGAAGCATTTACCAGATAAGGACAAGGAAAAATTTCCTTGTACAATTTGTCAAAAGgaTTTTTCCACGAAGCACACTTTGGCAGTTCATCTTAAAGTTCACACAGGAGAACGGAACTTCATGTGCGACACTTGTGGAAAATCATTTATAGCCAAAGGTTCTCTCGCTTATCATCTTCTAAGTCATACCGATGACAGAACTCATGTTTGTCAAACGTGCGGCAAAACTTTAAAGACTGCTAGATTATTAAGCAAACATCTCACGTTGCACTCGGTAACAGAAATGTACAAATGTGAGGTTTGTGAGAGACAATTTCGTGAACGCGGTAGGCTCAGAGAACACAGTCGGATTCATACAGGAGCTATGCCTTACAAATGTGAATATTGTGGAAAATGTTTTAGATTTGCTGGGATCTTaacaGTTCACCGAAGGCAGCATACTGGAGAAAGACCTTAcaattgtgaaaaatgtaatcgTTCCTTTACAAATTGGGCGAATTACAATAAGCATATGAAACGTATACATCATTACGACACCAGTAATCCAGAGAATAGCAGACGGCGTGCTGAACTTCATGCACTTTCTGTATCAAACAAAGCAGCTAAAGATGACACATCGGAGGGTGCTGCTTCAGAGACAAATCTTGATGTAAATTAA
- Protein Sequence
- MAKYTACRLCNSAADIFVNIFNEDGISRDLGTKMASCLQILVSSEDALPKTVCLTCCNKLNDFYEFYIKSHEVQDLLKDIYASRECVKETHSQSADENEKVTKVLQNMNQDNNSPYNIAEGAKDEIKCIEGLENINSDKNTECPSVVNVNKEKDVEIEIKEFKTSSWMKTESESDKEDDPHPSSSLQTEEHNPKKDPNLNETPVNPSQTGILDGYPWTCTICTDVVVDNAQELCKHYKFQHFQCAVFRCIHCEKQYDRYRSFVRHFKQHFDPKEYTCDICGKSFALKTILRSHARVHSNDRPHVCKVCGKSFKNYYSLTVHNKKHLPDKDKEKFPCTICQKDFSTKHTLAVHLKVHTGERNFMCDTCGKSFIAKGSLAYHLLSHTDDRTHVCQTCGKTLKTARLLSKHLTLHSVTEMYKCEVCERQFRERGRLREHSRIHTGAMPYKCEYCGKCFRFAGILTVHRRQHTGERPYNCEKCNRSFTNWANYNKHMKRIHHYDTSNPENSRRRAELHALSVSNKAAKDDTSEGAASETNLDVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00254563;
- 90% Identity
- -
- 80% Identity
- -