Ttab007464.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachelus tabidus
Gene Symbol
-
Assembly
GCA_030142655.1
Location
JARQTI010000469.1:1291282-1295131[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0027 0.23 12.4 0.8 2 23 150 173 149 173 0.87
2 16 0.95 82 4.4 0.2 2 23 206 227 205 227 0.91
3 16 0.13 11 7.1 0.6 2 23 236 258 235 258 0.93
4 16 0.0005 0.043 14.7 2.2 1 22 264 285 264 288 0.91
5 16 0.00019 0.017 16.0 6.5 1 23 372 394 372 394 0.98
6 16 0.0022 0.19 12.7 0.2 1 23 401 424 401 424 0.95
7 16 6.3e-05 0.0054 17.5 2.1 1 23 430 452 430 452 0.98
8 16 0.00043 0.037 14.9 2.1 1 23 458 480 458 480 0.97
9 16 1.3e-05 0.0011 19.6 0.8 1 23 486 508 486 508 0.97
10 16 0.087 7.5 7.6 1.0 1 23 521 544 521 544 0.96
11 16 9.2e-05 0.0079 17.0 3.9 1 23 560 583 560 583 0.96
12 16 0.00072 0.062 14.2 1.3 1 23 591 614 591 614 0.96
13 16 3.6e-05 0.0031 18.3 1.6 1 23 620 642 620 642 0.98
14 16 0.0045 0.39 11.7 6.9 1 23 648 670 648 670 0.98
15 16 7.8e-05 0.0067 17.2 3.1 1 23 676 699 676 699 0.98
16 16 0.048 4.2 8.4 5.4 1 23 705 727 705 727 0.97

Sequence Information

Coding Sequence
ATGAATTCTACAAAAACGTTCATTGTGAAAGTAGAAAATTCACATATTCCGTTATCAGTAACAGACACATTTAAAGACCTGCAGATGAAGTTGAAAGAACATGGGATAGATGTAAACATAGCGTCGATGCTAATTAAAGGAAGAATTGTAAATGAGTCTTCTGTCGTATCAGAGTGCCTTAGTGTcgaaagtaAGGATGTAGAGGATGAGACTGTAGAATTTGTATTACCAGATTTATCTGAAATGTCAGAAACAGCAATGATTTGTAATCAAGatgtCGAGACTCAAAAGGATAAGTATTCATTGTGTCGATTATGTGGTATGATGACAGAAGACccaattgatatttttgaggaatcaaatattacaaaaacaataaacaaattattaccGATATCTATATGTCAACAAGAAACACTATCACGATACATAGCAGGTGAGAAATTCGCTTGTATAACTTGTGAGAAAACATTTGTCAAACGAGCAAACTTGAATTATCACTTAAAAACATTTGGCCACAAAGGTGGAAAATTCGTGAACAGCATAGAGCATAATCAAAACACCGACTCCAGTAACGTGAAACTGTCTGATGTTGGTAAACCACGACCTAAGATAACTTGTTTAGAATGCGGAGCTCGTTTTGTTTTACAAGAAAGATATGAATTCCATATGGAAAGACATAAATCTGGAAAAATGGATGTTTGCGTGTGTAGTCTGTGCGGTAGAGAAtcaacaaatgaaaatgttttgtGGGATCATTATCAGTATATGCACAAACGCACGAAACGTTACGTTTGTACTACAtgtggaaaattatttcacaaacAGTCAATGTTGAGTAGGCATCAAGTCAAATACGGTCACAAAGGTACAAAAGAAATAGATATCGAAACGGATGACAATGCTATAACAATAGACAGTGCTGCTTTTAAAAAGGTGATAGCtgaagaaataatagaaatgaaatcCGTGAATTGCGTGCTCTGTGGAGAAGTAGTATGGGGCGTAGACCCAAATTTGATAAACGATGCTGTTACCTGTTCGAATTGTGAGAGACCTGGACTGTCTTTGCAAGTAGATTCCGACGGTGCTAAAGTAATATCACGTCGTCAGTATCACTGCAACATGTGTAACAAACATTTTACAACAAAAGATCGTCTAGAGTATCACATAATGCGCCACTCGGAAAATATGGAGGAATTTGTTTGTAGTACTTGTGGAAAGGAACTCAGTACCGAACAAGCTTTATTCGAGCATTACTTGTACGTGCACAAAGGCGCAAGACCACACGTTTGTGAGCTTTGTGGAAAATCTTATCAGTTCAAAGCTCGGTTAAAGGAGCATATGAGAAGTCATAGTGGAGAACGACCATTTGCCTGTGAAATATGTGGTCAACGATGTATGACGAATAATGCGCTACGCTCTCACAAAAAAACTCATATTACAGAGAAGCGATTTCCGTGTCAAATATGTAAGAAGGCATTCAGAAAAAGGCAGGATTTGAACGAACACTTGGAGAGACACTGGAAGAATGACAAGACGATGACGTTACCACAAGTGTTTAGTTGTTCTATTTGCATGGAGATGTTTCCAACTTTTCGGATTCTAAAAAAGCACATGAAAGAGACTCACAGCGTGGAGAGTCAAGATCCTATATTGACTGAATTGCAACCATGGTTTGAGTGCGAAGATTGTCACGAGAAGTTCAAGCATCAAATGTCTTTGAAAGTTCATCGTGAGAGGGTTCACGAGGGTAAAATGAAGCCCGTTTATCATTGTGACATATGTGACATCACATATAAGAATGCACGGGTACTCTCGAATCACATTAAGAATAAACACGAGGGTGGTAAACGGTATAAATGCGCTCAATGCGGTAAAGAGTACAATCAGTCTACGTCTTTAcataatcatattttattgcataCTGGAGAAAAGCCGTTCAGTTGTGAACATTGCGAAATGACGTTTCGCACTAAGGAATCCCGCGATCATCATCAACGAAAACATACTGGAGAACGTCCTTATAAATGTCCACATTGTGACAAAGCATTCGCTACTACTACTCAACGTCGAGAGCATCGAAAACGAGAACACGATGAAGGCAATAATCATCATTGTCCGGAATGTGGGAAAGTATGTTTTGGTGAACATGGCGTTAGAAGTCATTTAAATACTCATATGGCCGAGAAACAGCAGTCACagaatgatattaaataa
Protein Sequence
MNSTKTFIVKVENSHIPLSVTDTFKDLQMKLKEHGIDVNIASMLIKGRIVNESSVVSECLSVESKDVEDETVEFVLPDLSEMSETAMICNQDVETQKDKYSLCRLCGMMTEDPIDIFEESNITKTINKLLPISICQQETLSRYIAGEKFACITCEKTFVKRANLNYHLKTFGHKGGKFVNSIEHNQNTDSSNVKLSDVGKPRPKITCLECGARFVLQERYEFHMERHKSGKMDVCVCSLCGRESTNENVLWDHYQYMHKRTKRYVCTTCGKLFHKQSMLSRHQVKYGHKGTKEIDIETDDNAITIDSAAFKKVIAEEIIEMKSVNCVLCGEVVWGVDPNLINDAVTCSNCERPGLSLQVDSDGAKVISRRQYHCNMCNKHFTTKDRLEYHIMRHSENMEEFVCSTCGKELSTEQALFEHYLYVHKGARPHVCELCGKSYQFKARLKEHMRSHSGERPFACEICGQRCMTNNALRSHKKTHITEKRFPCQICKKAFRKRQDLNEHLERHWKNDKTMTLPQVFSCSICMEMFPTFRILKKHMKETHSVESQDPILTELQPWFECEDCHEKFKHQMSLKVHRERVHEGKMKPVYHCDICDITYKNARVLSNHIKNKHEGGKRYKCAQCGKEYNQSTSLHNHILLHTGEKPFSCEHCEMTFRTKESRDHHQRKHTGERPYKCPHCDKAFATTTQRREHRKREHDEGNNHHCPECGKVCFGEHGVRSHLNTHMAEKQQSQNDIK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-