Ttab005562.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachelus tabidus
Gene Symbol
SCAND3
Assembly
GCA_030142655.1
Location
JARQTI010000420.1:2006903-2009764[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00034 0.029 15.2 3.2 1 23 360 382 360 382 0.98
2 15 6.7e-05 0.0057 17.4 1.0 2 23 389 411 388 411 0.95
3 15 1.5e-05 0.0013 19.4 1.2 2 23 508 529 507 529 0.97
4 15 1.3e-05 0.0011 19.6 2.3 1 23 535 557 535 557 0.98
5 15 8.5e-05 0.0073 17.1 0.3 1 23 563 585 563 585 0.98
6 15 1.3e-06 0.00011 22.9 1.4 1 23 601 623 601 623 0.98
7 15 9e-06 0.00077 20.2 1.2 3 23 631 651 629 651 0.98
8 15 2.8e-05 0.0024 18.6 1.6 1 23 657 679 657 679 0.98
9 15 0.0041 0.36 11.8 0.3 1 23 685 707 685 707 0.99
10 15 7.7e-06 0.00066 20.4 0.3 1 23 713 736 713 736 0.94
11 15 2.3e-05 0.002 18.9 1.3 1 23 742 764 742 764 0.98
12 15 0.0005 0.043 14.7 4.7 1 23 770 792 770 792 0.98
13 15 7.5e-06 0.00065 20.4 0.2 1 23 798 821 798 821 0.96
14 15 2e-05 0.0017 19.1 0.8 1 23 827 849 827 849 0.95
15 15 4.4e-06 0.00038 21.1 4.5 1 23 855 877 855 877 0.99

Sequence Information

Coding Sequence
ATGACAACTGACTGGATGACAGAAAAGATTTCAATGAAGAATGTGCTACGTCAAGTTTTGAATGTAAGAACTGAGTCAGATTTTATATctgtcaaaaaagaaatggaattaTTTGATGAAACTTTATGTCCTAAAACACAAGAGATAGGAATTAATCGTGATCAATGCATTGATAAGCAAAAGACTAATGAAACTGATGCAGTGCCATCTTCTTCAAAAGCACAACCAGCTaGTACTTTACCATCACATAATGGAGAATGTAACACAGATATTTTGCCTGCAATTCCTAACGAAAGAAGTTTTGTATTAGCAAGTGTCATAAACCAAGGCTCATTGTGTAGAGGTCAAATTGATGTAATGGAGATACAAGCTGAAGAAGAACacaattacaaatatttgttcatttatGAAGATCAgttttctaaatttattgTTCTGAAAGCTTTACGAACTAATACTATCAAAGAAGTTACGTTAAAACTCTTTGATGTACTGACAATCATTGGAGCACCACGAATTTTGCAAAGTGGTAATGGTCGCGAATTTACCGAACGTGTGGTGCGTGAATTACGTTCACTTTGGACTAACCTTGCAATAGTGCATGGGAATATGTCAAAATGTGATGAAAGCAGTAAGAGAGATTACCAGAATCTTATAAAATCATGGCTCATAACAAATCCATCAAAAGTCTGGTATCAAGGTCTTAAATTTATACAGATCCTTGAAAATACAACTTTTCAATCCAAGGATGGTAAAATTCCGTATGATTTACTCTTTGGCCGTAACGTTCACAAGGTATGTGAGAATGGGAGTCTTTCTAAAGaagttattaacaaaatttggAGTGAGGAGCAATTGTACGAGCATCTAAAGGAGAATGGAAACATCTCCCTTGATATTGAATTCGGAGACAGCTCAGTTAAATCACCAAGAAATAACAGCAGTACAAATGGTTTTAATTTTGTGAATGTAAAAAGTGAAATGTCATTGAGCACAAATCAAATAGAAGATTCGCAATCAGACGAAGAAACTAGCACAGGTGATAGGTTACAGACACAAGACACGGACAAGTATCTGTTTAGGTGcaaaatctgtcaaaaacaGTACATGAAGTTAGGTCATTTAAAGAATCATATAAAAGCACATGTGAAAGCAGGTCGACTTGAATGTACTATTTGCCACAAGACATTCCGTCTTCCAAGTCTATATGATAAGCACATGAACGAAGTTCACAGTCAAGAAAAAATCTTCAGCGATGATGCTTTTCATTCTGCAAAGAGAATGGATACGGATGACATTTCATCAGAAAAAtccgaaaataaaaacgaaaaattagaAACTAGATCGGAAGAGAATCCTTTGGAAATAACCGAACGCATAAGTcctgagaaaaaagataacatGCTCCTCTGTATCTCAAACAAAAGCCACAAGAAAAACCTTAAACGCACAAACGCCCTAGCCAGAAGAAAAGTTTCCAAAGAGAATCGTCTAACTAAAGTGAATGGGGACCCATTGCTCGAGTGCACATATTGTCAACAAAAGTTTGACTTTCCAAGTGTCTTAAAAAGACATATGCGATCTCATACGAATGAAAGACCTTATGTTTGTCAAGTCTGCAACAAGAGTTTCAAGCAATTAGGACATCTGAGTCAGCATTCTTTGACACATACAGACTACAGGTCTTTCCAATGTGCAATTTGCGGAGTAAAATTTGAGTCTCTGGACAGCTTGAAGAATCATTCGCAAAGTCATAAAGGAGAATCAGTTGTATATCGACCAAAGGAGATTTATCGCCTCTTCGAATGTGACAACTGCAAAAAGGTATTCACAACAAAAAGTGTCTTGGAACGTCACATATTTACTCATACGCATGAGCGTCAATTTGGTTGTAAAGTATGTGGAAAAAGATTCAAACAAGCAGGTCACGTTAAGTCTCATATGCTGATTCACACAGGAGAACGCAAATTTGAGTGTAATATATGTTTAAAACGCTTTAGCTTATCAAATTCTCTCAAGAAACATATGTACGTACACAACGGCGAAAAGCCTTATCAGTGTGACGTATGTGGTGCCAGGTTTCTTGAAAAACGATATCTCAATGGACATTTAATGACCCACACAAATGAGCGTCCATTCTCTTGCAAAATATGTGGCAAAAGGTATACTCTTGCAGATACCCTGAGGCGTCATATAAGTGCAGCTCATGAGGATGGCAGAACCTACCAGTGCGAAATCTGTGCGAAAATGTTTAAGCAGCTTGCGCACTTATCAGTTCATAAGAAAGTGCACAACGATGAGCGGCCATTTCAGTGTCACCTTTGTGAGAAGAATTTCAAGCACAAGAATGTCCTCAAGTCGCACCTGGCGATACACGCTAATGTAAGACCGTTCGAGTGTGACGTTTGTAAAGCCACCTTTGTGAGAAAAACTAATTTACAAACTCACATAGCATCGGCTCATATGAATGAACGTCCTTACGCATGTAAGATATGCGATAAGCGCTTCAAGCAAATCAGCCATCTGAACGGTCACGTTGTGGTACATAGTAATTCTATGCCATATCAGTGTGACTTTTGTGACCGCCGGTGTAACAGATTAGATAATCTAAAAAAGCATATGCGTCTGCATACTAAAAATAAGGAGTAA
Protein Sequence
MTTDWMTEKISMKNVLRQVLNVRTESDFISVKKEMELFDETLCPKTQEIGINRDQCIDKQKTNETDAVPSSSKAQPASTLPSHNGECNTDILPAIPNERSFVLASVINQGSLCRGQIDVMEIQAEEEHNYKYLFIYEDQFSKFIVLKALRTNTIKEVTLKLFDVLTIIGAPRILQSGNGREFTERVVRELRSLWTNLAIVHGNMSKCDESSKRDYQNLIKSWLITNPSKVWYQGLKFIQILENTTFQSKDGKIPYDLLFGRNVHKVCENGSLSKEVINKIWSEEQLYEHLKENGNISLDIEFGDSSVKSPRNNSSTNGFNFVNVKSEMSLSTNQIEDSQSDEETSTGDRLQTQDTDKYLFRCKICQKQYMKLGHLKNHIKAHVKAGRLECTICHKTFRLPSLYDKHMNEVHSQEKIFSDDAFHSAKRMDTDDISSEKSENKNEKLETRSEENPLEITERISPEKKDNMLLCISNKSHKKNLKRTNALARRKVSKENRLTKVNGDPLLECTYCQQKFDFPSVLKRHMRSHTNERPYVCQVCNKSFKQLGHLSQHSLTHTDYRSFQCAICGVKFESLDSLKNHSQSHKGESVVYRPKEIYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLIHTGERKFECNICLKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRYLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYACKICDKRFKQISHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00298497;
90% Identity
iTF_00298497;
80% Identity
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