Tsti010304.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachelus stipa
Gene Symbol
-
Assembly
GCA_036026315.1
Location
JAYRCB010000603.1:338813-346585[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 31 8.3e-06 0.00081 20.3 1.0 1 23 180 202 180 202 0.98
2 31 0.0036 0.35 12.0 1.9 1 23 225 248 225 248 0.96
3 31 0.0003 0.029 15.4 1.0 2 23 255 277 254 277 0.96
4 31 0.0004 0.038 15.0 0.5 1 21 297 317 297 318 0.95
5 31 0.0033 0.32 12.1 0.2 2 23 415 436 414 436 0.95
6 31 0.0087 0.85 10.8 0.3 1 23 442 465 442 465 0.92
7 31 0.00016 0.015 16.3 0.1 1 23 538 561 538 561 0.96
8 31 0.013 1.3 10.2 0.7 1 23 567 590 567 590 0.96
9 31 0.16 16 6.8 1.5 1 23 603 625 603 625 0.97
10 31 3.4e-05 0.0033 18.4 0.6 3 23 670 691 668 691 0.96
11 31 0.011 1 10.5 0.8 2 23 754 777 753 777 0.94
12 31 4.1 4e+02 2.3 0.0 2 23 786 808 786 808 0.84
13 31 0.031 3 9.0 0.0 2 23 815 837 814 837 0.95
14 31 1.7e-05 0.0017 19.3 1.2 1 23 845 867 845 867 0.98
15 31 0.11 11 7.3 2.0 2 23 898 921 897 921 0.93
16 31 0.00028 0.027 15.5 3.3 1 23 924 947 924 947 0.97
17 31 0.04 3.8 8.7 0.5 2 23 954 976 953 976 0.95
18 31 0.0043 0.42 11.7 5.1 1 21 1003 1023 1003 1024 0.95
19 31 0.0036 0.35 12.0 1.8 2 23 1038 1059 1037 1060 0.93
20 31 0.28 27 6.0 0.9 1 23 1063 1086 1063 1086 0.94
21 31 0.022 2.1 9.5 1.4 2 23 1093 1116 1092 1116 0.91
22 31 1.3 1.2e+02 3.9 0.2 2 23 1124 1146 1124 1146 0.95
23 31 4.1 4e+02 2.3 0.0 2 23 1153 1175 1152 1175 0.87
24 31 0.3 29 5.9 2.7 2 23 1184 1206 1184 1206 0.96
25 31 4 3.9e+02 2.4 2.0 2 23 1212 1234 1212 1234 0.92
26 31 7.3 7.1e+02 1.6 0.0 3 23 1297 1318 1295 1318 0.91
27 31 0.00048 0.047 14.7 1.0 1 21 1344 1364 1344 1365 0.95
28 31 0.66 64 4.9 1.3 2 23 1464 1486 1463 1486 0.93
29 31 0.81 79 4.6 0.4 2 23 1493 1515 1492 1515 0.94
30 31 0.92 90 4.4 2.5 1 23 1526 1548 1526 1548 0.97
31 31 0.12 11 7.2 0.3 3 20 1557 1574 1557 1576 0.94

Sequence Information

Coding Sequence
ATGATGCTTTTGCAGTGTCTTGTAGATGCAACAGCAGTGTTCCGTTTAAACGCAGCCGATGCTCTTGACATAATTTCAGAGAGAATAACTGCATGTGTCAATGCAGTGGCATTATTGGAAAGATGTTTACCCTCCAACGATGCGAGTAACAATGGAGCGCAGACTCATATGGATCAGTACACAGAGCTGCGCTCTGAACTTCtcaaggagaaagaaaatatgccTATACTCATTCCTGAAGCCCCCATAGTCAATCCCAATGCAGCCCTGGGCACTCCACCAAGACTGAATTCTGATGGTGAAGCGGATCATGAGATTGAAGAAATACTTGATCAGAGTGGCACCGATGAAGgtCAAGACGAGCACGAGGATCCTAAATCGGACGAGTATGAAATGGATATGGAAACTAATCCAAGTGATTTCCTGGAGATGACGTCCATGGTTACTGACGACGTCGAGGAGATACGATCGCTTTCCATGCCACGTGAGAAACAAGACACCAGTGTTTTCCAGCACACGTCGGAACAGCACGAGGTCTACGTGTGCTCTTTGTGCAACAAGGCCTTCAGCTCGAAAGGGCATCTCTCTTTGCATGCCAGAATCCACGTGGGTGCTGGTGACGTAATCGGCGAGAAAGTCATCACCGACGATCACACCTCCTACAAGAGACCTTATCAATGCGACCTCTGCAATAAGTCGTACTCGACGGCAAAGCACAGATGGGGACACGTCTCAACGACACATAGGGGCCATCCAGCGGTTACGTGTAGATACTGCTCTCGGATTTACTCGACGAGAACGAACCTGGAGGAACACATAAAGTCTCGTCATGCGGGCTTACCACCACCTCCGGAACTACCACTTCCTTATATTCAACCTGACAACAGGTTCCAGTGCAAAACGTGTCCAAAGATGTACACGAACGTCACCGATCTGAATAAGCACAGTCGTGTCTGTCTTGGCGAAAGACGTAGGGAACTGCCCAACAAGATTTCCGTTCAGAAAAGTAAAAGTCTTATAGACACGTCGGATCTGTCTAGTATGGACTCCGACGACGAGAGTAAGGACTATCGGGATGCCGAAGCGAAACTCGCCAAGAATCCCCAGCTGACTATACTTAAGCAGGCACTGACCAAGGGCGATAGCCTTAAGCGAGATTACGAGGACAAAAATAGAATTGGCTCGAAACCTAAGAAAGTCGCAAGGACAGacAGCAGTGAAACCGATGCCCAGAAGAGGTGGTACTGTGAAACCTGTCCACAGAATTTCACGTCGGtggaaaatttaaaggaaCACGAAGTCACCCACGAGGCGGACAAACCCTACATCTGCATCCTCTGCGAAAAGGATTTCGTTCTTAAGTCGTCTCTGAGTAGACACATTTTGACCTCTCACGGAGTCGATCCTTGTCCAATCGTTGACAGTGATAAGTGTCTTAAGAAAACAGTGGCTAATCTGCAAATGCGGAATAAACAGGCTCAGATCATCTACAACGAGTCCAAGTTAACCAAAGAGGCATCTCAATCTCCATTCTCGCCAGAGATGAATATGGATAACGACGAGGAGGATCGTGAGAGCGGCCACGAGAACATGATTGAAATCGAGACTGTGTTTGTCTGTGAAATATGCACCAGGGATTTCAATGATCGTGCATCGCTGTGGTTACACATCAGAGCGACGCATAAAGAATTCGCGGCGTTTGCTTGTGGAGTCTGCTTAAAAATTTGCTCGGATAATACTCAGCTCTTGAATCACGTTAACATGTACCACGGTGGCTCAAAGCTTCAGGTCTCAGAACAAAGAAGGTATAGTTGTACAATCTGTGGCAGGCAACACGATTCCAGGAAGAAGCTCATCACTCACGTCTCTATTCATAATGTTGATCCTGGTTATGATCCAGCGAGTTTTGTTCAActtaatagtaattattataacgaGAATCTGAATAGTAACGAAGCCAATGAACAGCCTATTGATTTTGATGGCGAAGACGGAGAGAAGATCGACTGCTATATATGTTACAAGTCTTTTCCTAACGAGGATCATCTCATTAGGCATCAGCGGAACGCACACAAGtcCGAACCCCTGGTGCAGATGGGTGACCCTAGCAATGGTAATGGATCCGGTTCTACTCCAGGCAATGGAAATCGTGCTCAGTATCATTTGTTCTTCGTTTGTGAACTTTGTGGCAGTTCGCATCCAAGTAAATGGGAGCGGTGGCTACACGTTAGCGGAGTGCACAGTAATGAGCCTGCTATAAGATGCGAGCGCGAGGACTGCGGTAAAATATTTGCTACTAGGTCACTTCGCAACGAGCACGTGCAACATCATCTTCTTCAGGGTGCCTCGCCGAATACCTGCGAGATCTGTGGGAAGCTGTGGGGCAGTCGTGTGGATTACTGGAAACATGTAATGGGCGTACACTCTGACACGGTACCCTTAATCTGTGGGGTATGTCTAAAGGTCTTCCCCGACGTCGTCCAACTTAGTGCTCACGTCAAGTCGAATCATTGGCCTCTGACCAATGGAGACTTCAGCTGTGATATCTGTGGAAGGCCGTActcaaataaatcaaaaatgtcTCGGCATAGGAAGATACATGGTTTGGATATGGACAGCTATGCCAACAGCACCTTACACGAGGTTATGAACGATTCTAGGCTAGAGCAGGGTTCCCACGAGAGCGATCTCACCTGCGAGATGTGTTCTGATGTAAAATTCACTAGCCTGGATGACCTGTGCAATCACAGAAGAACAACGCACGGACTGTTCCCTTGTGATCTTTGTAATAAGTGCTACGGTCGGACCTCGCACCTTTGGAAACATGTCAATCGTGTTCACAAGGGTCACGAGGACGTCACCTGCAGGTACTGCATGAAAACCAGTGCTTCAAGGGATCATCTCGCTGCTCACATTGCCAAGATACACAGGTACGAGCCGGAGATGAAGAAGGAAATACGGGAGTCGTCCATCTTCAAGTCGCCTAATCCTGAGGACGAGACTCTTCATCATTGTGAAAAGTGTAACAAAGGTTTCCACAAGAGATATCTTCTACGTCGTCACATGAAAGGTTGTCAGAACTACAGGAAGGATCCTGGTGCGTTGCTCACCAGGTGTCGTGCCTGCGAGAGGATATTCAAGGACCGTGCTAGTCTTCAGAAACACATTGAGAATCATCACAGTACCTATACCTGCCATCTCTGCGATGAGACCATAACCTCCAAGTTAGGTATCATGACGCATAATAGAGTGAACCACATGAACCATCCAGACCTGACTTGTGACTATACCAGTTGCAAGAAACTGTTCCGTACCAAGGAGGACCTGGAGTCTCATCGCAAAGATCACAAGTACCTTGGTATTCCTAACGTCTGCGACTTTTGCGGTGATACAGTTGAGAATAAGCTTAAGCTCAAGATGCATATACTGTCCTTACATCGTAACGAAATCGGAGTATCCTGTGGTGTCTGTCTTATACCCATGAAGGATCCTAAGGAACTCAAGAGACACGTGGAAGACGTCCACAGGAGTATACTATCTAAACCTAATACCTGTCAGGTGTGCGGCAAGCAATACGCCTCCAAGTGGAAAGCTTTTGATCATACGAAAAAGTGTCACGGCAAAGTGTTCAGGACTTGTAAACAGTGTCTTGCAGTGTTCACTAGTGACGAGGATATAAAGCATCACTACGAACACGTTCACAACGTTCCTAAGGATCAGCTTGCTGGTTTTGAGTTTAGGTTGGACGTCGGTCCCAAGCAGGAGGAGTTTGAAGCCCCTGATATCGTTGTCAAGGAAGAGCCTCAAGAGCTTGATTTCTACGAGGAGCCTTGCGAGGAAGACTATCACAACTCTAAGAGAAGGAGGTCGTTTTCTGATACTCTGGACTGTGAGATGTGTCCTGAGATCTTCCTCAATGACGTCACTCTGGCTGAGCACTATAAAAACGTTCACAATACGGATCCTATGCGTATATTCAAAAAGCTTAAACTAGACACTGCAAAGCGGAAAACGAAAAACCGTGAGAACTTTGAATGTAAGAACTGCAGAAAGCAGTTTTCCACGAAAACCCTGTTCTGGAACCATATAAATGTCTGCTCCAAGCGTAATTCTGTCAACAGGGATGACAGAGTATACTCCACATCCATTTTGGAGTCTCACCTCAAGAACAACAATCAGATTAAAAAAGAGGAGCCTGAACCCATCCTGAACGAATCTAATCTGAACATCCCTGACTTCAATCTCTTTGAGGATATTAATATGCAACTCTCTGGACAGAAACCGGTACCTAACCTCATGCCTCTGTCTCATATGAAATCGCTGTCAAGTATAAAGTGTTCGAGAAAGGACTCCAGGAAGGTGTACGATGAGTCGACGAATACCGAGTGTGCCTGTGAAGTCTGTGGAAAACAATGGCCAGCTAAGAAGCATCTCTGGCAGCATCTTATAAGATTTCACAGAACGGAAGCTGCTGTCACCTGTGGCGTTTGTCTGAAGCTCTGCAAAACTTATCAGGACCTGGCGGATCATCTCAAGGCAGCCCACGAAGCCATCCTTACCTGCGAGGGTAACAATTTCACTTGTAAAACCTGTGGCAGGTATCATAATGCTAGAAGTAAATTACTCTTGCATATGAGCATACACATTAATTGTAATGGTAGCAGCTGGTGTAGAAAATGTCAACAGAGTTTTGAGAGTGAAGATAAACTCAAGGAACACGTCACTATCTGTTCTGGCGGTAACCAGGTGGAGTACGAGGATCATAGTAATGATCTGGAGAACGCTGCCAAGAACAACGAGAATGATCACGattataagaatattcttaTGGACGACGAGAATTCCTTGATGGAGGAAGTGGATGAGGTCGAGGAAGTTGAGTTTGAGACTGAAGCTTCTGATAATCGTGAGGATAGTAATTCAGATGAGAGTGGTGATTCCGATAGTGATAGTAATCCTAGTAGTAGTGACGACGAGGATAACGAAAATGAGAACGAGGATGAAGCTGAGTGTAGGACTAACAGTAGAGCTACCGAGGTTAGCAGTGACAGTGAGAGTGCAAATCAAGACTCGGACGAGGATAAAGTTAATGTGGCTAAAGATCATCATCAGAAGCAGAGTGAAGGCATCAAGTGTAATAACATTGTCAAGACAGAGCctgaggatgaggaggattCCCAGTATCTACAGTATAAGGAAGAGTCTCCTGCATTGAAGGTCGACGAATATCCTATGGAGGAAAGGATGGATCATGAGAATCACGAAGTTGTCAAGGTCGAGGCTGATGCTCCGGATTACTCTGACGATGACTTAgacgaggacgacgatgaTGGACCCCCAGTACTAAGTCCAATGATGCCATTACCACCGGTTCAGGATGCAGAACATGACAACAGACATTTGGACGACGAGATACAGCATGAATTAACGCCTATGGTGTctattaaaaagtcaaatgagACTGAAGGGGTCGAGGATGACGATCCCCAGGAGTTCAAGGACCAAATAGAAAACGGTAAGTCGACCTCCAGCTCCTCAGAATATTATGAGAAATCTGATCCGCAGAAGGTGAGTTCGAATAATGTGCCTTCACTGGTAGTAGGAGAATCGCGATCAGATACAGAAGAGGAGGACGAGGCTGAGGATGACGAAGAAGAGTACGATAGTCAAATGGAAGCTGTGGATCAGACCgaagaagagaataaaaggTTCATCAGTTACGAGACGCATAACACTGAAGACTCCGTTGAGGGTAGCTTCGCAGAAAATTCCGAAGACGAGACAATGGAGGTCGAGGTTGCTGATGGAGATGGTAGCGTTCAGATACACGACCTCGACGGTACTGTACTGATGGTAGCAAATGATTCAGATGGTAATCAGATTCTGATCCAAAGGAACGTAGCCGACGTGATGGAGAACGACGATTCTAATCCGGAAGTCACCGAGTACGTCTACCAAGAAGGGCAGGAGTACGAATTGGAGGAAGGATACGCGGAGTCGCAACAAGCAGATGACGTTCAGGACGTCTCCGACGAGGTTcaggaggaggaagatgaaATCGGTAACGAGGAATTTGACGAGGAAGTCGTTACGAGGGAAAACGAAGCTGAGGAAGGCGATGACATGGAACCTGAACAAGAGGAgtatgaggaggaggaggaagaggagcaggagcaggaagtggaagaggaagaggaggaggggCAGGAGCAAGAACAGGAACAGGGACAGGATCATGAGCAGGAAGCGGAAGACTGTGAAGAGGAGGTTGttgacgaggacgaggattCCAAAAAACCGATTAATAGTGCCAAAACCGTAGTGTCAAGGACGTAA
Protein Sequence
MMLLQCLVDATAVFRLNAADALDIISERITACVNAVALLERCLPSNDASNNGAQTHMDQYTELRSELLKEKENMPILIPEAPIVNPNAALGTPPRLNSDGEADHEIEEILDQSGTDEGQDEHEDPKSDEYEMDMETNPSDFLEMTSMVTDDVEEIRSLSMPREKQDTSVFQHTSEQHEVYVCSLCNKAFSSKGHLSLHARIHVGAGDVIGEKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHRGHPAVTCRYCSRIYSTRTNLEEHIKSRHAGLPPPPELPLPYIQPDNRFQCKTCPKMYTNVTDLNKHSRVCLGERRRELPNKISVQKSKSLIDTSDLSSMDSDDESKDYRDAEAKLAKNPQLTILKQALTKGDSLKRDYEDKNRIGSKPKKVARTDSSETDAQKRWYCETCPQNFTSVENLKEHEVTHEADKPYICILCEKDFVLKSSLSRHILTSHGVDPCPIVDSDKCLKKTVANLQMRNKQAQIIYNESKLTKEASQSPFSPEMNMDNDEEDRESGHENMIEIETVFVCEICTRDFNDRASLWLHIRATHKEFAAFACGVCLKICSDNTQLLNHVNMYHGGSKLQVSEQRRYSCTICGRQHDSRKKLITHVSIHNVDPGYDPASFVQLNSNYYNENLNSNEANEQPIDFDGEDGEKIDCYICYKSFPNEDHLIRHQRNAHKSEPLVQMGDPSNGNGSGSTPGNGNRAQYHLFFVCELCGSSHPSKWERWLHVSGVHSNEPAIRCEREDCGKIFATRSLRNEHVQHHLLQGASPNTCEICGKLWGSRVDYWKHVMGVHSDTVPLICGVCLKVFPDVVQLSAHVKSNHWPLTNGDFSCDICGRPYSNKSKMSRHRKIHGLDMDSYANSTLHEVMNDSRLEQGSHESDLTCEMCSDVKFTSLDDLCNHRRTTHGLFPCDLCNKCYGRTSHLWKHVNRVHKGHEDVTCRYCMKTSASRDHLAAHIAKIHRYEPEMKKEIRESSIFKSPNPEDETLHHCEKCNKGFHKRYLLRRHMKGCQNYRKDPGALLTRCRACERIFKDRASLQKHIENHHSTYTCHLCDETITSKLGIMTHNRVNHMNHPDLTCDYTSCKKLFRTKEDLESHRKDHKYLGIPNVCDFCGDTVENKLKLKMHILSLHRNEIGVSCGVCLIPMKDPKELKRHVEDVHRSILSKPNTCQVCGKQYASKWKAFDHTKKCHGKVFRTCKQCLAVFTSDEDIKHHYEHVHNVPKDQLAGFEFRLDVGPKQEEFEAPDIVVKEEPQELDFYEEPCEEDYHNSKRRRSFSDTLDCEMCPEIFLNDVTLAEHYKNVHNTDPMRIFKKLKLDTAKRKTKNRENFECKNCRKQFSTKTLFWNHINVCSKRNSVNRDDRVYSTSILESHLKNNNQIKKEEPEPILNESNLNIPDFNLFEDINMQLSGQKPVPNLMPLSHMKSLSSIKCSRKDSRKVYDESTNTECACEVCGKQWPAKKHLWQHLIRFHRTEAAVTCGVCLKLCKTYQDLADHLKAAHEAILTCEGNNFTCKTCGRYHNARSKLLLHMSIHINCNGSSWCRKCQQSFESEDKLKEHVTICSGGNQVEYEDHSNDLENAAKNNENDHDYKNILMDDENSLMEEVDEVEEVEFETEASDNREDSNSDESGDSDSDSNPSSSDDEDNENENEDEAECRTNSRATEVSSDSESANQDSDEDKVNVAKDHHQKQSEGIKCNNIVKTEPEDEEDSQYLQYKEESPALKVDEYPMEERMDHENHEVVKVEADAPDYSDDDLDEDDDDGPPVLSPMMPLPPVQDAEHDNRHLDDEIQHELTPMVSIKKSNETEGVEDDDPQEFKDQIENGKSTSSSSEYYEKSDPQKVSSNNVPSLVVGESRSDTEEEDEAEDDEEEYDSQMEAVDQTEEENKRFISYETHNTEDSVEGSFAENSEDETMEVEVADGDGSVQIHDLDGTVLMVANDSDGNQILIQRNVADVMENDDSNPEVTEYVYQEGQEYELEEGYAESQQADDVQDVSDEVQEEEDEIGNEEFDEEVVTRENEAEEGDDMEPEQEEYEEEEEEEQEQEVEEEEEEGQEQEQEQGQDHEQEAEDCEEEVVDEDEDSKKPINSAKTVVSRT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00295442;
90% Identity
iTF_00297739;
80% Identity
-