Basic Information

Insect: Trachelus stipa
Gene Symbol: -
Assembly: GCA_036026315.1
Location: JAYRCB010000112.1:911723-913721[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.9e-05 0.0048 17.8 2.5 2 23 182 203 181 203 0.97

2 15 0.0001 0.0099 16.8 0.8 2 23 210 231 209 231 0.97

3 15 9.7e-06 0.00094 20.1 0.6 1 23 237 259 237 259 0.98

4 15 3.3e-07 3.2e-05 24.7 0.9 1 23 265 287 265 287 0.98

5 15 1.8 1.8e+02 3.4 1.2 1 20 293 312 293 315 0.92

6 15 2.3e-05 0.0022 18.9 1.7 1 20 321 340 321 343 0.95

7 15 1.5e-06 0.00014 22.6 3.4 1 23 349 371 349 371 0.97

8 15 4e-05 0.0039 18.1 0.6 1 23 377 399 377 399 0.98

9 15 1e-05 0.00099 20.0 5.0 1 23 405 427 405 427 0.97

10 15 6e-08 5.8e-06 27.0 1.4 1 23 432 454 432 454 0.97

11 15 0.00019 0.019 16.0 0.4 1 23 460 482 460 482 0.97

12 15 1.6e-06 0.00016 22.5 6.2 1 23 488 510 488 510 0.98

13 15 4.1e-06 0.0004 21.2 1.5 1 23 516 538 516 538 0.98

14 15 3.6e-06 0.00035 21.4 0.5 1 23 544 566 544 566 0.97

15 15 0.00056 0.055 14.5 1.0 1 23 572 595 572 595 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.9e-05	0.0048	17.8	2.5	2	23	182	203	181	203	0.97
2	15	0.0001	0.0099	16.8	0.8	2	23	210	231	209	231	0.97
3	15	9.7e-06	0.00094	20.1	0.6	1	23	237	259	237	259	0.98
4	15	3.3e-07	3.2e-05	24.7	0.9	1	23	265	287	265	287	0.98
5	15	1.8	1.8e+02	3.4	1.2	1	20	293	312	293	315	0.92
6	15	2.3e-05	0.0022	18.9	1.7	1	20	321	340	321	343	0.95
7	15	1.5e-06	0.00014	22.6	3.4	1	23	349	371	349	371	0.97
8	15	4e-05	0.0039	18.1	0.6	1	23	377	399	377	399	0.98
9	15	1e-05	0.00099	20.0	5.0	1	23	405	427	405	427	0.97
10	15	6e-08	5.8e-06	27.0	1.4	1	23	432	454	432	454	0.97
11	15	0.00019	0.019	16.0	0.4	1	23	460	482	460	482	0.97
12	15	1.6e-06	0.00016	22.5	6.2	1	23	488	510	488	510	0.98
13	15	4.1e-06	0.0004	21.2	1.5	1	23	516	538	516	538	0.98
14	15	3.6e-06	0.00035	21.4	0.5	1	23	544	566	544	566	0.97
15	15	0.00056	0.055	14.5	1.0	1	23	572	595	572	595	0.94

Sequence Information

Coding Sequence: ATGGAAGATTTTACAGTGAAAGACGAACCAATGGATGCTTTAAGTTTAGAGGCACAGGTGATGGCTGAGAACATTGTAAGCGTTGTACTTAAAGAAGAACCTGGAGCTAGATTCGATCCAAATTATATAGATGATATCTGTTCAGGGAACTTTGAAAAGGTATTTCTACCTATCGAGAATCAGGAAGTTGATTTATCTGAAGAAATGAATTTATGGCAGCAGGTTCAACTAGGAATAAAGAATGAGGACAATATGCATCACCATTGGCCACAGCAGGTCATTGACAACAGTTTATGTGAGAAGGAAGATAACTCACTGCATCGATACCTGGTCGATTCCGAATTCCAGCAAACTTATCTTGATTCAACTACCTCAAGAGATACAATGAATTCAGTGAACGAAGATGATCCTGGACGATATAACTTATTTGGCATAAACCCTCAGCAATCTAAATTCTGCAAAATACAGTGCATCGTGTGTAAAAAATGGTTTCTAAACAATGAATCTCTGGTCACTCATTTAGGTACACACTGTGAGGGAACTCAATGTGAAGTGTGTAATGAAAACTTTGAACACAAATCTAGTTTGCATGCTCATATGCTACTTCATATGGGCATGAGTCCATTAGAATGTAACATATGTCAGAAAAGATTTGCCAACAAATTACGCTTACGTGGTCACATGCAATCCCATACAACAAATAATCCATATGAGTGTGATACCTGTCAAAAAACATTCATAAAACGATCAGGTTTAAGCAATCATCTGTTGATTCACGCTGGTGAAAGATTATTCAAGTGCGAAGTTTGTCAAAcaacttttaaagaaaaaggaaatttgaaTAGACATATGCTAATTCATACAGGAGAACGTTCATACAAATGCGATGTGTGCTGTGCAGCTTTTTGCGAGAAAGCTAAACTTGACGTTCACATACCAGTTCACAGTGATGTAAAGCAACATCAATGTACCGTATGTCACAGATCATTTGCACAAAAAACAGCGCTAAATAATCACATGCCGGCACATAGTGGTCAAAAACCGCATAAGTGCAATATTTGCCAAAAAACATACAAACGAAAATCTGAATTAGTGAGGCATACCCTGGTGCATACTGGCGAGAGGCCATACGAGTGTAAAGAATGCCTAATGACATTCAGGGAAAAGGCAAAGTTGAACTCCCATATGTTGGTTCATACGGGCGAGAAACCACACGAGTGTCACATATGTCAAAAAGCTTGTGCACGTAAATCGGATCTCAACAGTCATATGCTCTCCCACACTGGTGGCCAGTATGATTGCCACATATGCGAGAAAATCTTCACAAGAAAATCTGATTTAAATAGACACATCTTAATACATACTGGTGAGAAACCATTTGCGTGTCATTTATGTGAAATGGCATTCAGAGAAAAGGCTAGACTAAATGCTCACATGCTTATTCACACTGGTGATAAAAGACATACCTGTCATATCTGTCAAAAAACATTCAGGGAAAAATCTACCCTGAAAAAACACATGCTCATCCATACTGGAGATAGACCGTACAAGTGTTTTGTTTGTCGCAAGGCCTTTACTCAAAAAACGACACTTAATAGCCACATATTGATTCATACCGGTGAGAGACCTTATGAATGTAATGTctgtcaaaaaatgtttagagaACGATCTGCATTGAGAAAACATGAACTAATTCACACAGGTGAAAAACCATATGAATGCATCATTTGTCTAAAGAAATTCACCTACAAATCGGCACTAAAAAGTCATATAACGAGCAATCATTCATCGTAG
Protein Sequence: MEDFTVKDEPMDALSLEAQVMAENIVSVVLKEEPGARFDPNYIDDICSGNFEKVFLPIENQEVDLSEEMNLWQQVQLGIKNEDNMHHHWPQQVIDNSLCEKEDNSLHRYLVDSEFQQTYLDSTTSRDTMNSVNEDDPGRYNLFGINPQQSKFCKIQCIVCKKWFLNNESLVTHLGTHCEGTQCEVCNENFEHKSSLHAHMLLHMGMSPLECNICQKRFANKLRLRGHMQSHTTNNPYECDTCQKTFIKRSGLSNHLLIHAGERLFKCEVCQTTFKEKGNLNRHMLIHTGERSYKCDVCCAAFCEKAKLDVHIPVHSDVKQHQCTVCHRSFAQKTALNNHMPAHSGQKPHKCNICQKTYKRKSELVRHTLVHTGERPYECKECLMTFREKAKLNSHMLVHTGEKPHECHICQKACARKSDLNSHMLSHTGGQYDCHICEKIFTRKSDLNRHILIHTGEKPFACHLCEMAFREKARLNAHMLIHTGDKRHTCHICQKTFREKSTLKKHMLIHTGDRPYKCFVCRKAFTQKTTLNSHILIHTGERPYECNVCQKMFRERSALRKHELIHTGEKPYECIICLKKFTYKSALKSHITSNHSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00294657;
90% Identity: iTF_00294657;
80% Identity: -