Basic Information

Insect: Trachelus stipa
Gene Symbol: SCAND3
Assembly: GCA_036026315.1
Location: JAYRCB010000363.1:2308614-2311475[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00034 0.033 15.2 3.2 1 23 360 382 360 382 0.98

2 15 9.8e-05 0.0096 16.9 1.0 3 23 390 411 388 411 0.94

3 15 1.5e-05 0.0014 19.5 1.9 2 23 508 529 507 529 0.97

4 15 1.3e-05 0.0013 19.6 2.3 1 23 535 557 535 557 0.98

5 15 8.4e-05 0.0082 17.1 0.3 1 23 563 585 563 585 0.98

6 15 1.2e-06 0.00012 22.9 1.4 1 23 601 623 601 623 0.98

7 15 8.9e-06 0.00087 20.2 1.2 3 23 631 651 629 651 0.98

8 15 8.1e-06 0.00078 20.3 1.9 1 23 657 679 657 679 0.98

9 15 0.0041 0.4 11.8 0.3 1 23 685 707 685 707 0.99

10 15 7.7e-06 0.00074 20.4 0.3 1 23 713 736 713 736 0.94

11 15 2.3e-05 0.0022 18.9 1.3 1 23 742 764 742 764 0.98

12 15 0.0005 0.048 14.7 4.7 1 23 770 792 770 792 0.98

13 15 7.5e-06 0.00072 20.4 0.2 1 23 798 821 798 821 0.96

14 15 2e-05 0.0019 19.1 0.8 1 23 827 849 827 849 0.95

15 15 4.4e-06 0.00043 21.1 4.5 1 23 855 877 855 877 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00034	0.033	15.2	3.2	1	23	360	382	360	382	0.98
2	15	9.8e-05	0.0096	16.9	1.0	3	23	390	411	388	411	0.94
3	15	1.5e-05	0.0014	19.5	1.9	2	23	508	529	507	529	0.97
4	15	1.3e-05	0.0013	19.6	2.3	1	23	535	557	535	557	0.98
5	15	8.4e-05	0.0082	17.1	0.3	1	23	563	585	563	585	0.98
6	15	1.2e-06	0.00012	22.9	1.4	1	23	601	623	601	623	0.98
7	15	8.9e-06	0.00087	20.2	1.2	3	23	631	651	629	651	0.98
8	15	8.1e-06	0.00078	20.3	1.9	1	23	657	679	657	679	0.98
9	15	0.0041	0.4	11.8	0.3	1	23	685	707	685	707	0.99
10	15	7.7e-06	0.00074	20.4	0.3	1	23	713	736	713	736	0.94
11	15	2.3e-05	0.0022	18.9	1.3	1	23	742	764	742	764	0.98
12	15	0.0005	0.048	14.7	4.7	1	23	770	792	770	792	0.98
13	15	7.5e-06	0.00072	20.4	0.2	1	23	798	821	798	821	0.96
14	15	2e-05	0.0019	19.1	0.8	1	23	827	849	827	849	0.95
15	15	4.4e-06	0.00043	21.1	4.5	1	23	855	877	855	877	0.99

Sequence Information

Coding Sequence: ATGACAACTGACTGGATGACAGAAAAGATTTCAATGAAGAATGTGCTAAGTCAAGTTTTGAATGTAAGAACTGAGCCAGATTTTATATCTGTCAAACAAGAAATGGAATTATTTGATGATCCTTTATGTCCTAAAACACAAGAGATAGGAATTAATCGCGATCAATGCATTAATAAGCAAAAGACTAATGAAACTGATGCAGTGCCATCTTCTTCAAAAGCACAACCAGCTaGTACATTGCCGTCACATAATGGAGAATGCAACACAGATATTTTGCCTGTAATTCCTAACGAAAGAACTTTTGTATTAGCAAGTGTCATAAACCAAGGCTCATTGTGTAGAGGTCAAATTGATGTAATGGAGATACAAGCTGAAGAAGAAcacaattacaaatatttgttcatttatGAAGATCagttttctaaatttattgttCTCAAAGCTTTACGAACTAATACTATCAAAGAAGTTACATTGAAACTCTTTGATGTACTGACAATCATTGGAGCACCGCGAATTTTGCAAAGTGGTAATGGTCGCGAATTTGCTGAACGTGTGGTGCGCGAATTACGTTCACTTTGGACGAACCTTGCAATAGTGCATGGGAATATGCCAAAATGTGATGAAAGCAGTAAGAGAGATTACCAGAATCTTATAAAATCATGGCTCATAACAAATCCATCAAAAGTCTGGTATCAAGGtcttaaatttatacaaatccTTGAGAATACAACTTTTCAATCCAAAGATGGTAAAATTCCATATGATTTACTATTTGGCCGTAACGTTCACAAGGTATGGGAGAACGGGAGTCTTTCTAAAGaagttattaacaaaatttggaGTGAAGAGCAAATGTACGAGCATCTCAAGGAGAATGGAAACATCTCTCTTGATATTGAATTTGGAGACAGCCCAGTAAAATCGCCAAGAAATAACAGCAGTACAAAtggttttaattttgtgaatGTAAAAAGTGAAATGTCACTGAGCACAAATCAAATAGAAGATTCGCAGTCTGACGAAGAAACTAGCACAGGTGATAGGTTACAGACACAAGACACGGACAAGTATTTGTTTAGGTGTAAAATCTGCCAGAAACAATATATGAAGTTaggtcatttaaaaaatcatataaaagcACACGTGAAAGCAGGTCGACTTGATTGTAATATTTGCCACAAGACATTCCGTCTTCCAAGTCTATATGATAAGCATATGAATGAAGTTCACAGTCAAGAAAAAATCTTCAGCGATGATGCTTTTCATTCTGCAAAGAAAATGGATACGGATGACATTTCACCAGAAAAATccgaaaataaaaacgaaaaattagaAACTAGATCGGAAGAGAATCCTTTGGAAATAACCGAACGCATAAGTcctgagaaaaaagataacatGCTCCTCTGTATCTCAAACAAAAGTCacaagaaaaatcttaaacgCACAAACGCCCTAGCCAGAAGAAAAGTTTCCAAAGAGAATCGTCTAACTAAAGTGAATGGGGACCCATTGCTCAAGTGCACATATTGTCAACAAAAGTTTGACTTTCCAAGTGTCTTAAAAAGACACATGCGGTCTCATACAAATGAAAGACCTTATGTTTGTCAAGTCTGCAACAAGAGTTTCAAGCAATTAGGACATCTGAGTCAGCATTCTTTGACACATACGGACTACAGGTCTTTCCAATGTGCAATTTGCGGAGTAAAATTTGAATCTCTGGACAGCTTGAAGAATCATTCGCAAAGTCATAAAGGAGAATCAGTTGTATATCGACCAAAGGAGATTTATCGCCTCTTCGAATGCGACAACTGCAAAAAGGTGTTCACAACAAAAAGTGTCTTGGAACGTCACATATTTACTCATACGCATGAGCGTCAATTTGGTTGTAAAGTATGTGGAAAAAGATTCAAACAAGCAGGTCACGTTAAGTCTCATATGCTGATTCACACAGGAGAACGCAAATTCGAGTGTACTATATGTTCAAAACGCTTTAGCTTATCAAATTCTCTAAAGAAACATATGTACGTACACAACGGCGAAAAGCCTTATCAGTGTGACGTATGTGGTGCTAGGTTTCTTGAAAAACGATATCTCAATGGACACTTAATGACCCACACAAATGAGCGTCCATTCTCTTGCAAAATATGTGGCAAAAGGTATACCCTTGCAGATACCCTCAGGCGTCATATAAGTGCAGCTCATGAGGATGGCAGAACCTACCAGTGCGAAATCTGTGCAAAAATGTTTAAGCAGCTTGCGCACTTATCAGTTCATAAGAAAGTGCACAACGATGAGCGGCCATTTCAGTGTCACCTTTGTGAGAAGAATTTCAAGCATAAGAATGTTCTCAAGTCGCACCTGGCGATACACGCTAATGTAAGACCGTTCGAGTGTGACGTTTGTAAAGCCACCTTTGTGAGAAAAACTAACTTACAAACTCACATAGCATCGGCTCATATGAATGAACGTCCTTATGCATGTAAGATATGCGATAAGCGCTTCAAGCAAATCAGCCATCTGAACGGTCACGTTGTGGTACATAGTAATTCTATGCCATATCAATGTGACTTTTGTGACCGCCGGTGTAACAGATTAGATAATCTAAAAAAGCATATGCGTCTGCATACTAAAAATAAGGAGTAA
Protein Sequence: MTTDWMTEKISMKNVLSQVLNVRTEPDFISVKQEMELFDDPLCPKTQEIGINRDQCINKQKTNETDAVPSSSKAQPASTLPSHNGECNTDILPVIPNERTFVLASVINQGSLCRGQIDVMEIQAEEEHNYKYLFIYEDQFSKFIVLKALRTNTIKEVTLKLFDVLTIIGAPRILQSGNGREFAERVVRELRSLWTNLAIVHGNMPKCDESSKRDYQNLIKSWLITNPSKVWYQGLKFIQILENTTFQSKDGKIPYDLLFGRNVHKVWENGSLSKEVINKIWSEEQMYEHLKENGNISLDIEFGDSPVKSPRNNSSTNGFNFVNVKSEMSLSTNQIEDSQSDEETSTGDRLQTQDTDKYLFRCKICQKQYMKLGHLKNHIKAHVKAGRLDCNICHKTFRLPSLYDKHMNEVHSQEKIFSDDAFHSAKKMDTDDISPEKSENKNEKLETRSEENPLEITERISPEKKDNMLLCISNKSHKKNLKRTNALARRKVSKENRLTKVNGDPLLKCTYCQQKFDFPSVLKRHMRSHTNERPYVCQVCNKSFKQLGHLSQHSLTHTDYRSFQCAICGVKFESLDSLKNHSQSHKGESVVYRPKEIYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKVCGKRFKQAGHVKSHMLIHTGERKFECTICSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRYLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHIASAHMNERPYACKICDKRFKQISHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00298497;
90% Identity: iTF_00298497;
80% Identity: -