Tsti006281.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trachelus stipa
Gene Symbol
-
Assembly
GCA_036026315.1
Location
JAYRCB010000398.1:120069-123469[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 6.9e-05 0.0067 17.4 1.2 2 23 182 203 181 203 0.96
2 16 6.3e-07 6.1e-05 23.8 2.5 1 23 209 231 209 231 0.98
3 16 0.00014 0.013 16.4 0.1 1 23 237 259 237 259 0.97
4 16 0.0022 0.21 12.7 3.2 3 23 267 288 266 288 0.95
5 16 2.7e-06 0.00026 21.8 0.8 1 23 293 315 293 315 0.96
6 16 1.9e-06 0.00018 22.3 0.7 1 23 325 347 325 347 0.98
7 16 0.00085 0.082 13.9 0.5 1 23 500 522 500 522 0.93
8 16 2.2e-06 0.00022 22.1 1.2 1 23 528 550 528 550 0.99
9 16 5.2e-07 5.1e-05 24.0 0.4 1 23 556 578 556 578 0.98
10 16 0.0011 0.11 13.6 1.0 3 23 586 607 585 607 0.97
11 16 3.1e-05 0.003 18.5 2.5 1 23 612 634 612 634 0.97
12 16 1.2e-05 0.0011 19.8 1.8 1 23 643 665 643 665 0.98
13 16 4.8e-06 0.00046 21.0 1.1 1 23 671 693 671 693 0.97
14 16 6.1e-05 0.0059 17.5 1.3 2 23 700 721 699 721 0.97
15 16 4.1e-06 0.0004 21.2 3.3 1 23 727 749 727 749 0.98
16 16 3.7e-06 0.00036 21.4 0.4 1 23 755 777 755 777 0.99

Sequence Information

Coding Sequence
ATGCTTATTTCCCTCCGCGTGAAAACgttaATCGATGGGAAGAAGTCCTCAAATCCGTTGGAGCAAAGGAACGGAATACCACTGTCGGAAAGTTCTTCGGCCCCAGAGACCATCGGGGCTAATGACCAGGGCAGCCCGAGTGCATGCGGAACCAAGAGCTTCTCTGTTTCCGCTTACGCCACAGAGTCGGGTACGTCGACACATGTCGAGAAGGATTCACGCGCCGAAGAGGACGAGCTGAAGAGGACCCACCGAACACCTCGTGACTCGACTGAATCGCAGCAGCCGGCATACTACGCGATATTCGCTGGAGCTTTAAAGGATATGGACAGAGCTTTCTATCTTCCACAGCGAGAGGTTGACGAGGCTCACGATGTCTATGAGCGTAACGAGGACTTGAAGATACCGGTTGACTTCAGTCCGTCGCATGAGGCGCTAGCTTGTTTGGATGCTGCGAGGCAGCCATTAAAAACTGAATTGGATGGAAGGGGAAGGATCAAAGACGTCAAGGCTGATCGAAATCCAGATAcggaaaagaaattgaagtgCGAGGAGTGCGATCGCGTTTGCGTGAACAAGGAACTCTTGAGAAAACATAAGATTGTCCATAGCAAAGTCTTCCGGCACGAGTGCCAAATCTGCGGAAAGAAATTCAAACGGTCGACTGAGCTCAAGATACACGGGAGGACCCACTCCTCCGAGAGAAATTTCGCGTGCGAGCTTTGCGGTAGTGCTTTCAAGCTGAAGTCTCAGTTGGTAGCCCACGCGAGGCGACACACAGCCGATTACAGGGTCTTCTGTAAGCTCTGCGGCAAGGGATTCCACAATAACAGCGACTACCAGTCTCACAACAAAGTAAAGCACGTTGCCAAGGAACATGCGTGCCCATCCTGCGGCAGGTCCTACAGGGAAGCATCTCTCCTTCGCCGCCATCAGAGAATTCACCAGCCGGATTACGTGCCGGACAAACGGTTTCAGTGTGAGATTTGCGGCAAGACGTTTGTTCTTCGCAAGTCCCTCGAAATGCACTTGAAAAGTCACACAGGAGAGAAAAGGTCGCCCGTCGAAGAGGAAGAAACGGAGTCAGAGGAGCTGGAGAGTGGGAGGAGGGAAGAGGAGCtttcaaaaatgaaggaaGAGCCAATCGACGAGTTCATCCAAGAGGAGAAGTCCGTCGATGAAGAGGAGGAATACCAGTTGGAAGAATCCACAGAGATAACCTCCTCTCGAAGGAGCGACGTGGTATCTCAGGAGGACCTGATAAATTTCGTCGATAAGACCAACAACAAGTGTTCTCGTTCCGTGAAGAGGGAGCGCGGTTGCGCAGCTGCACCGGACGATTACAATGAATCGAAAGGCTACAAAGCTCAGGACGTCGGCTTCGGAATATCCTATGAGAACGTTGAGACGACCAAGCGTGAGGTGAGCTCAGCTTCTTCGGAGACGACGAACGGTGCGACGGTTGCTGCTCAATCGGCTGTGTCGAAGAACAGGCTCTATCAGTGCCAGATATGTGCGAAGCGTTTCAgatcgaaaaatttatttgaaggTCATCTTGTGGCTCACAGTGACGCAAGGCCCTACCAATGTGACGTTTGCAATAAATCATTCAAAAGGACAAACACACTTGCAGTGCACAAGCGGATTCACACCCGGGAACGAAACTTCGTATGTGACGTGTGCGGTCGCGCATTTGTCCAGGCATCTCAGCTAGCGACGCATCATCGTCGTCACTTTGAAAAGTACACGAGGTTCTGCGAGATTTGCAGTAAGGGCTTCTTCACAAACGCCGAGCTTCACGGACACATGAACGTCAAGCACGAGGCCAAAGAACACGTTTGCCAGGTTTGCGCGAAATCCTTTCCCAATAATCACACCCTTGCCAGACACTTGAAGATGCACGATCCAAACTTCAAACCCGTCAAGCATCAGTGTGAATTTTGCGGAAAAACCTTCGCTTACAAGAACTCGCTAGTGGTTCACGTAAAGTCGCACACCGGTGAGAATAAGTTTGACTGTCACCTGTGCGGCAAATCGGTCTCCTCGAAGGGCTCCCTTCAGGATCATCTACGACTTCACGGCGGGGAAAAATCTCTTGTCTGCGACGTTTGCGGCAAGGCATTCCATAAGAGGACAACGCTCGTCGTTCACAAGAGGACTCATACCGGGGAGAAACCGTACAGCTGCGACACCTGCGGGAAGTCATTCACTCAGCACTCGACTCTCGTAATTCATAAGCGCTATCACACAGGACAAAGACCCTATCAGTGCTCCTATTGCGCCAAGTCCTTTGTATCCAGGGCACTTCTCAATGCCCACACTAAGGTCCATGTCGTTAACGTCATGATCGTTCAGCCGGTCTAA
Protein Sequence
MLISLRVKTLIDGKKSSNPLEQRNGIPLSESSSAPETIGANDQGSPSACGTKSFSVSAYATESGTSTHVEKDSRAEEDELKRTHRTPRDSTESQQPAYYAIFAGALKDMDRAFYLPQREVDEAHDVYERNEDLKIPVDFSPSHEALACLDAARQPLKTELDGRGRIKDVKADRNPDTEKKLKCEECDRVCVNKELLRKHKIVHSKVFRHECQICGKKFKRSTELKIHGRTHSSERNFACELCGSAFKLKSQLVAHARRHTADYRVFCKLCGKGFHNNSDYQSHNKVKHVAKEHACPSCGRSYREASLLRRHQRIHQPDYVPDKRFQCEICGKTFVLRKSLEMHLKSHTGEKRSPVEEEETESEELESGRREEELSKMKEEPIDEFIQEEKSVDEEEEYQLEESTEITSSRRSDVVSQEDLINFVDKTNNKCSRSVKRERGCAAAPDDYNESKGYKAQDVGFGISYENVETTKREVSSASSETTNGATVAAQSAVSKNRLYQCQICAKRFRSKNLFEGHLVAHSDARPYQCDVCNKSFKRTNTLAVHKRIHTRERNFVCDVCGRAFVQASQLATHHRRHFEKYTRFCEICSKGFFTNAELHGHMNVKHEAKEHVCQVCAKSFPNNHTLARHLKMHDPNFKPVKHQCEFCGKTFAYKNSLVVHVKSHTGENKFDCHLCGKSVSSKGSLQDHLRLHGGEKSLVCDVCGKAFHKRTTLVVHKRTHTGEKPYSCDTCGKSFTQHSTLVIHKRYHTGQRPYQCSYCAKSFVSRALLNAHTKVHVVNVMIVQPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-