Basic Information

Insect: Trachelus stipa
Gene Symbol: -
Assembly: GCA_036026315.1
Location: JAYRCB010000403.1:10680-20265[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.1e-05 0.0059 17.5 1.4 1 23 437 459 437 459 0.96

2 18 2.3e-05 0.0022 18.9 1.9 1 20 465 484 465 487 0.94

3 18 1.7e-05 0.0016 19.3 1.2 1 23 493 515 493 515 0.98

4 18 8.8e-05 0.0085 17.0 4.4 1 21 521 541 521 543 0.95

5 18 2.7e-05 0.0026 18.7 4.6 1 23 549 571 549 571 0.99

6 18 2.7e-05 0.0026 18.7 5.3 1 23 577 599 577 599 0.97

7 18 1e-05 0.001 20.0 7.1 1 23 605 627 605 627 0.97

8 18 1e-07 9.8e-06 26.3 2.7 1 23 633 655 633 655 0.98

9 18 7.4e-05 0.0072 17.3 6.7 1 23 661 683 661 683 0.97

10 18 2.3e-05 0.0022 18.9 5.8 1 23 689 711 689 711 0.98

11 18 6.1e-07 5.9e-05 23.8 2.9 1 23 717 739 717 739 0.98

12 18 9.1e-06 0.00088 20.1 7.8 1 23 745 767 745 767 0.98

13 18 2.9e-05 0.0028 18.6 9.1 1 23 773 795 773 795 0.98

14 18 3.8e-05 0.0037 18.2 7.5 1 23 801 823 801 823 0.98

15 18 0.0018 0.18 12.9 8.8 1 21 829 849 829 851 0.94

16 18 1.4e-05 0.0013 19.6 0.4 1 23 857 879 857 879 0.98

17 18 0.033 3.2 8.9 4.5 1 23 889 911 889 911 0.98

18 18 5.3e-07 5.2e-05 24.0 1.3 1 23 917 939 917 939 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.1e-05	0.0059	17.5	1.4	1	23	437	459	437	459	0.96
2	18	2.3e-05	0.0022	18.9	1.9	1	20	465	484	465	487	0.94
3	18	1.7e-05	0.0016	19.3	1.2	1	23	493	515	493	515	0.98
4	18	8.8e-05	0.0085	17.0	4.4	1	21	521	541	521	543	0.95
5	18	2.7e-05	0.0026	18.7	4.6	1	23	549	571	549	571	0.99
6	18	2.7e-05	0.0026	18.7	5.3	1	23	577	599	577	599	0.97
7	18	1e-05	0.001	20.0	7.1	1	23	605	627	605	627	0.97
8	18	1e-07	9.8e-06	26.3	2.7	1	23	633	655	633	655	0.98
9	18	7.4e-05	0.0072	17.3	6.7	1	23	661	683	661	683	0.97
10	18	2.3e-05	0.0022	18.9	5.8	1	23	689	711	689	711	0.98
11	18	6.1e-07	5.9e-05	23.8	2.9	1	23	717	739	717	739	0.98
12	18	9.1e-06	0.00088	20.1	7.8	1	23	745	767	745	767	0.98
13	18	2.9e-05	0.0028	18.6	9.1	1	23	773	795	773	795	0.98
14	18	3.8e-05	0.0037	18.2	7.5	1	23	801	823	801	823	0.98
15	18	0.0018	0.18	12.9	8.8	1	21	829	849	829	851	0.94
16	18	1.4e-05	0.0013	19.6	0.4	1	23	857	879	857	879	0.98
17	18	0.033	3.2	8.9	4.5	1	23	889	911	889	911	0.98
18	18	5.3e-07	5.2e-05	24.0	1.3	1	23	917	939	917	939	0.97

Sequence Information

Coding Sequence: ATGAATAGTGAGCAGCATGCATTGCCAGCGACTACGCAGGCTCAGCAAGAGGAAGTAAACTCGGGTCAAAGTGGTCGTCCTTCGTACCCAGGTGGTTCGACTAGTTCAAGCAGTCACAACAATGTAGGAAGCACCCGGAATTCCTCTGAGGAGCAGCGCGTAGGTACAGCAGTAGCGTTAGCCTCCTCGGTAGCTAAATATTGGCTCTTCACCAATCTGTTTCCCGGGCCGCTACCCCAGGTCTCGGTCTACCACCATAACCACCAGATCTCCTCAAGTAggagtggtggtggtgttgaGGCATCTCCAAAAGAGTCTTCGTTTAACCAGGAAATGGCGTTGACCTCGAATTCGCATCATCAGTCGACGACTtcccatcatcatcatcatcaagcTTCGATTAGCGGCGTCGGTCATCACGGCTCTCTGCAGTCCAATCAGCAGATTCCAGGCTCTCTTCCTGGCCTTAGCCTAGACGGGACGCACATTCCCGCAAGTGTCAGTCACTTGCAGGCGGCGCATGCTCAAATGCAGCAGCAGATGCAGtcgcaacagcagcagcagctgcacCAGCAGccgcagcaacagcagcaacaatcTCATCATCAGATACAGCAGAGCCATCAGAATGCACAGAACAGTGGACCAAGCTCGCAGAGTCAGAACTCACAACGGGATGATAATAAAGTAAAGGACGAGGATGGTAGTTGCACTACGGAACGGTGCAGCGATAATCAAGTCCATTGTCAGGTCCAGTGTGATCTTCAGCTACAGCCGCCACAGGATCTTCAGCAGAGTCTGatgcagcaacagcagcagcaacaaatTGGCGTCAACATTAGCGGCAGTTCCACTGCGGAAAGCGGAACCCAGAACAATTCAGAGAAGCccgagaaggagaaggaaatgCGTCAGCTGAACATGGCACAGTTTCAGCTTCCTGATCTTAAACCTGGTGGTCATATGATGGACGTTAGAACAGCCGACGGCTCGGTCGTTAAAATAAGCGCCGGAAACGAACAAGATCTAGCAAAGACTCTTGGCGTAGAGATGGTACAAAATATGTACAAGGTAAATGTCGAGGATATCAATCAACTGTTGGCGTACCACGAGGTCTTTGGAAAGCTGCAAAGTGAGATAGCAGCTGGTACCACTCTCGTAGGTGGTACCGTACCCACGCAAACGGTCACCACCATACAAAATGGAACACCGATAGTACAGCAAGTTCAACTTAACAAGTTTGACATAAAGACAAGCGACGGGGAGGCCACGCCCGGACCAAGTGCCTCGCCTGTATCCGTTGGCAGCCATGCCTGCGAGATCTGCGGCAAGATCTTCCAGTTTCGCTATCAGCTTATCGTGCACCGCAGATATCATACTGAAAGGAAGCCATTCACGTGCCAGGTCTGCGGAAAGGCATTCACCAATGCCAATGATCTAACTCGTCATGGTAAATGTCACCTGGGTGGATCCATGTTCACCTGTTCAGTCTGCTTCCACGTGTTCGCTAACGCGCCGTCCTTGGAGCGCCATATGAAGCGTCACGCTACCGACAAGCCCTACAATTGTACAGTGTGCGGAAAGAGTTTCGCTAGGAAGGAACATCTTGACAACCATACTCGCTGTCACACCGGCGAAACACCTTACAGGTGTCAGTATTGCGCCAAAACTTTTACACGCAAGGAGCACATGGTGAACCATGTTCGCAAGCATACTGGCGAGACTCCGCATCGCTGCGACATATGCAAGAAGAGCTTCACTCGCAAGGAACACTTCATGAATCATGTCATGTGGCACACTGGCGAGACTCCACATCATTGCCAGGTCTGCGGGAAAAAGTACACGCGCAAGGAGCACCTTGCCAATCATATGCGTTCCCATACCAACGACACGCCGTTCCGATGTGAGATTTGTGGTAAGTCGTTCACGAGGAAGGAGCACTTCACGAACCACATAATGTGGCACACGGGCGAGACGCCACATCGCTGTGATTTCTGCTCGAAGACGTTCACGCGAAAGGAGCATCTACTGAACCACGTTCGCCAGCACACGGGTGAGTCTCCACACCGATGCGGCTTCTGCTCCAAATCGTTCACCAGAAAGGAACACCTTGTTAACCACATCCGCCAACACACAGGGGAGACGCCCTTCCGCTGTCAATACTGTCCGAAAGCGTTTACGCGAAAGGACCATCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCGTTCACGCGGAAGGAACATTTGACCAATCACGTGCGTCAACATACAGGCGAGTCGCCACACCGATGCCACTTCTGCTCCAAGTCATTTACACGTAAGGAGCACTTGACGAATCACGTCAGAATCCACACCGGTGAATCGCCACATAGGTGTGAATTCTGTCAGAGGACGTTCACTCGGAAAGAACACCTCAATAATCATCTCCGTCAGCATACCGGAGATTCGTCGCATTGTTGCAATGTGTGCTCGAAACCGTTCACGAGAAAGGAACATCTCGTGAACCACATGCGATGTCACACTGGCGAACGTCCGTTCGTCTGCACCGAGTGCGGCAAGAGTTTCCCACTCAAGGGAAATCTCCTATTCCACATGCGCTCCCACAACAAGGGAAGCAACGCGGAGAGACCGTTCCGCTGTGACCTTTGTCCCAAAGACTTCATGTGCAAGGGCCACCTGGTCTCCCACAGAAGATCCCACTCTGATGAGCGACCGCACAGCTGTCCGGACTGTGGCAAGACCTTCGTCGAGAAGGGCAATATGCTGAGACATCTGCGAAAGCACGCTGCTGAAGGCCCACCTACGCAGGTCAGCACGCCCTCGGCAATTCCTCAACCGGTTCTACCGATACCCGCTGCCGCGGTACTGGTTGGTCATCCTCTGGCTGCTCCGCAACCGCCTCCAGTTGTTCCTCAGCATACCGTCGTGGTTCCAACACCTCCTGGTGTTCTCACGTCGTACTAA
Protein Sequence: MNSEQHALPATTQAQQEEVNSGQSGRPSYPGGSTSSSSHNNVGSTRNSSEEQRVGTAVALASSVAKYWLFTNLFPGPLPQVSVYHHNHQISSSRSGGGVEASPKESSFNQEMALTSNSHHQSTTSHHHHHQASISGVGHHGSLQSNQQIPGSLPGLSLDGTHIPASVSHLQAAHAQMQQQMQSQQQQQLHQQPQQQQQQSHHQIQQSHQNAQNSGPSSQSQNSQRDDNKVKDEDGSCTTERCSDNQVHCQVQCDLQLQPPQDLQQSLMQQQQQQQIGVNISGSSTAESGTQNNSEKPEKEKEMRQLNMAQFQLPDLKPGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTTLVGGTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEICGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFTNANDLTRHGKCHLGGSMFTCSVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCGFCSKSFTRKEHLVNHIRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCSKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVSTPSAIPQPVLPIPAAAVLVGHPLAAPQPPPVVPQHTVVVPTPPGVLTSY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00899003;
80% Identity: -