Tsti005265.1
Basic Information
- Insect
- Trachelus stipa
- Gene Symbol
- -
- Assembly
- GCA_036026315.1
- Location
- JAYRCB010000363.1:1850135-1857000[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.1e-13 1.5e-09 37.9 0.0 1 39 287 326 287 330 0.90 2 4 2.5e-12 4.8e-09 36.4 0.1 2 39 342 379 341 382 0.94 3 4 9e-19 1.7e-15 57.0 0.0 2 45 397 441 396 441 0.97 4 4 1e-18 2e-15 56.8 0.1 1 42 448 490 448 491 0.97
Sequence Information
- Coding Sequence
- ATGGGTCATCCGAGTGAGTGGATGAAACGTGGTCTTATAAGAACCCCCAGTTACGTCTGCGTGGAGCAATCCCTGCTCAAGACAGCCGATCAGCTGAAGATCAAGGGCCTCTGCGAAGTGCCAGAGAGCAAGGACGGTCCACCGTCGGTCAGTCTGAGCTCACCAGGTATAAATTCAAGCACACCGCGGCTCAACTACTCCAAACTGAAGAGGCACCATCCCAGGTACAAGAGACCCAGGTTCGAGCCTCGAACCGACTCCAGGCATTACGAGCAGTATAAAGAGGAAGAGGCCCCCGAGGCCTTCAGTCGTGACGATAAGGAGAATCACAGAGACTGGCAGACCGAGGATGAAGAGTGCGCGGAGGCCGCAGTAGTCCTGGAGTCCTGCCAACGTGACAACAACAACGGTAACAGTACAAATAACAATAACGGTGACATGTTTTGTCACACAGGGTTAGGTCACTACGGTCATCATCCGGACCCGGGAGAGGTCGATCTACCCCCTGAGACTCAGCCCACACCCCCCAGCGCTACTTTAGTTGGCACCACGATCACCCACCTGAGAGATCCCGATCATCACTCGACAGATATCCAGAATTGCGACAGTGTCAAGATCAAGTTCGAGACTTTGCACACGATGGATTCCTCGGATACGATCGATATCGATAGCCACATGTCGGACAGGGCGAGTGTGAGTTCGAAGAACGCTGTGGATAACGATAatatgatgatgatcacgCCAGAATTATTGGGCCTCATGCCGTCGGGAAGTTCGGTACATTCGGATTCCGGTGAGACAAATGCGAGAGGGCACTTGGGTCAGTCTGGCTCGCATCATCACGGTTCCAAGTCTTGGACGCAGGAGGACATGGACGCGGCCTTGGAGGCCCTTAGGAATCACGATATGAGTCTTACAAAAGCATCAGCAACATTCGGTATACCATCTACGACCTTGTGGCAGCGTGCTCATCGTCTTGGGATTGATACTCCAAAAAAGGATGGACCCACCAAATCTTGGAGCGACGAGAGTCTGAACAACGCGCTGGAGGCACTCAGGACCGGTACCATCTCGGCTAACAAGGCTTCAAAGGCCTTTGGCATTCCCTCGAGCACCCTGTACAAAATTGCTAGGAGAGAGGGTATCAGATTAGCTGCTCCCTTCAACGCGAGCCCCACCACTTGGTCTCCTGCCGACCTGGACAGAGCCCTCGAGGCAATAAGGTCCGGTCAGACGTCGGTGCAAAGAGCCTCCACCGAGTTTGGAATTCCTACAGGAACTCTGTACGGGAGATGCAAGAGGGAAGGCATCGAGCTCAGCAGAAGCAATCCGACGCCTTGGAGCGAGGACGCCATGACGGAGGCTCTGGAAGCAGTTCGGTTGGGTCACATGAGCATCAACCAAGCAGCCATTCACTATAATTTACCATATTCATCCCTTTATGGACGATTCAAGAGAGGGAAGTACGAAGAACCTGTTGTCAGTGAAATGTCTCAAGATGGTGGCAGCCCTCACTATCATCAGAGTCCTAATCAGAATCACTCCACTTCTCTCCCCGATCAAATGCCTTATCAGGGCAGCTGA
- Protein Sequence
- MGHPSEWMKRGLIRTPSYVCVEQSLLKTADQLKIKGLCEVPESKDGPPSVSLSSPGINSSTPRLNYSKLKRHHPRYKRPRFEPRTDSRHYEQYKEEEAPEAFSRDDKENHRDWQTEDEECAEAAVVLESCQRDNNNGNSTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAVDNDNMMMITPELLGLMPSGSSVHSDSGETNARGHLGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVSEMSQDGGSPHYHQSPNQNHSTSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00292363;
- 90% Identity
- iTF_00292363;
- 80% Identity
- -