Tiud002528.1
Basic Information
- Insect
- Trachelus iudaicus
- Gene Symbol
- -
- Assembly
- GCA_030142595.1
- Location
- JARQTH010000193.1:2454-3020[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 7.3e-07 0.00082 19.0 0.0 2 39 29 65 28 71 0.87 2 3 6 6.7e+03 -3.1 0.0 27 38 101 113 99 115 0.74 3 3 0.38 4.3e+02 0.7 0.1 30 38 163 172 163 179 0.85
Sequence Information
- Coding Sequence
- ATGGGCCGAATGAAGGAAGATACAAAGGGGAAATGTGGCgacaagaaaaacgaaaaattgaaaacaaaatttttcaactatcGTGAAGAAGATATTCGATTGGCACTGAAGACTATACAAGATGGAACGCGGATTAGCACGGCGAGCAAAACATTTAAAGTTCCTCGGACTACATTGCGCAATAAGCTATCTGGAAGAGCGCCAGAAACGTCAGGACGCATTGGGCGAGAAGCTGTGCTTGGACGCGATATTGAAAAGAGATTGGCACAGATGATTTTGCAGAAGAGTAAAATGGAATTCCCTGTAAATAAGGACTCGCTGTCGTATTCAGTTAAGAAGCTCCTAGAGACGGAACACTTGCCTAACCCCTTCATAGACAACTTCCCTGGAAGGAAGTGGTTCGAAGCTTTCCTCCGACGCCATCCACGAGTTACGCAAAAAAGCGGAGCACCTCTCCAAAGCTCGAACTATTCTGATCGAAAAGTGTATTCGACTCTGGTTCACAAATGTAAGAGATCAGTTCGGGGAAAAAGTCGAAATACTTCAAGATCCTCGACGGGTGTTTAA
- Protein Sequence
- MGRMKEDTKGKCGDKKNEKLKTKFFNYREEDIRLALKTIQDGTRISTASKTFKVPRTTLRNKLSGRAPETSGRIGREAVLGRDIEKRLAQMILQKSKMEFPVNKDSLSYSVKKLLETEHLPNPFIDNFPGRKWFEAFLRRHPRVTQKSGAPLQSSNYSDRKVYSTLVHKCKRSVRGKSRNTSRSSTGV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -