Tiud005378.1
Basic Information
- Insect
- Trachelus iudaicus
- Gene Symbol
- -
- Assembly
- GCA_030142595.1
- Location
- JARQTH010000323.1:1527370-1531659[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.7e-13 1.1e-09 37.9 0.0 1 39 305 344 305 348 0.90 2 4 3e-12 3.3e-09 36.3 0.1 2 39 360 397 359 400 0.94 3 4 1.1e-18 1.2e-15 56.9 0.0 2 45 415 459 414 459 0.97 4 4 1.2e-18 1.4e-15 56.7 0.1 1 42 466 508 466 509 0.97
Sequence Information
- Coding Sequence
- ATGGAGCCAGCCACACCGAGTACACCGTCAGCCAAGCCCTTGCCCCCGATGCCGCCTAATCGCGCCACCCCGTGCTTGATTAAAGAACAGAGCCGCTCGGCTGCTGCAAGAGGGGGCGGGAGGTCTCTGCTCAAGACAGCCGATCAGCTGAAGATCAAGGGCCTCTGCGAAGTGCCAGAGAGCAAGGACGGTCCACCTTCGGTCAGTCTGAGCTCACCAGGCATAGAGTCAGGCACACCGCGGCTCAACTACACCAAACTGAAGAGGCACCATCCCAGGTACAAGAGACCCAGGTTCGAGCCCCGAACCGACTCCAGGCATTACGAGAAGTATAAAGAGGAGGAGGCCACCGAGGCCTTTGGTCGTGACGATAAGGAGAATCACAGAGGCTGGCAGACCGAGGATGAAGAGTGCGCAGAGGCCGCAGTAGTCCTGGAGTCCTGCCAACGTGACAACAACAACGGTAACAGtacaaataacaataacgGTGACATGTTTTGTCACACAGGGTTAGGTCACTACGGTCATCATCCGGACCCGGGAGAGGTCGATCTACCCCCTGAGACTCAGCCCACACCCCCCAGCGCTACTTTAGTTGGCACCACGATCACCCACCTGAGAGATCCCGATCATCACTCGACAGATATCCAGAATTGCGACAGTGTCAAGATCAAGTTCGAGACTTTGCACACGATGGATTCCTCGGAtacgatcgatatcgatagCCACATGTCGGACAGGGCGAGTGTGAGTTCGAAGAACGCTGTGGATAACGATAATATGATGATGATCACGCCAGAATTGTTGGGCCTGATGCCGTCGGGAAGTTCGGTACATTCGGATTCCGGTGAGACTAATGCCAGAGGGCACTCGGGTCAGTCTGGCTCGCATCATCACGGTTCCAAGTCTTGGACGCAGGAGGACATGGACGCGGCCTTGGAGGCCCTTAGGAATCACGATATGAGTCTTACAAAGGCATCAGCAACATTCGGTATACCGTCTACGACCTTGTGGCAGCGTGCTCATCGTCTTGGGATTGATACTCCAAAAAAGGATGGACCCACCAAATCTTGGAGCGACGAGAGTCTGAACAACGCGCTGGAGGCACTCAGGACCGGTACCATCTCGGCTAACAAGGCTTCAAAGGCCTTTGGCATTCCCTCGAGCACCCTGTACAAAATTGCTAGGAGAGAGGGTATCAGATTAGCTGCTCCCTTCAACGCGAGCCCCACCACTTGGTCTCCTGCCGACCTGGACAGAGCCCTCGAGGCAATAAGGTCCGGTCAGACGTCGGTGCAAAGAGCTTCGACCGAGTTTGGAATTCCTACAGGAACTCTCTACGGGAGGTGCAAGAGGGAAGGCATCGAGCTCAGCAGAAGCAATCCGACGCCTTGGAGCGAAGACGCCATGACGGAGGCTCTGGAAGCCGTTCGGTTGGGTCATATGAGCATCAACCAAGCAGCCATTCACTATAATTTACCATATTCATCCCTCTATGGACGATTCAAGAGAGGGAAGTACGAAGAACCTGTTGTCAGTGAAATGTCTCAAGATGGCGGCAGCCCTCACTATCATCAGAGTCCTAATCAGAATCACTCCACTTCTCTCCCCGATCAAATGCCTTATCAGGGCAGCTGA
- Protein Sequence
- MEPATPSTPSAKPLPPMPPNRATPCLIKEQSRSAAARGGGRSLLKTADQLKIKGLCEVPESKDGPPSVSLSSPGIESGTPRLNYTKLKRHHPRYKRPRFEPRTDSRHYEKYKEEEATEAFGRDDKENHRGWQTEDEECAEAAVVLESCQRDNNNGNSTNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTDIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAVDNDNMMMITPELLGLMPSGSSVHSDSGETNARGHSGQSGSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVSEMSQDGGSPHYHQSPNQNHSTSLPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00292363;
- 90% Identity
- iTF_00292363;
- 80% Identity
- -