Tman001449.1
Basic Information
- Insect
- Trabutina mannipara
- Gene Symbol
- -
- Assembly
- GCA_900080175.1
- Location
- FKYK01018212.1:31476-33498[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 4.2 3.5e+02 2.0 0.1 1 12 258 269 258 278 0.80 2 7 0.00025 0.021 15.3 0.3 1 23 287 309 287 309 0.98 3 7 0.0035 0.29 11.7 2.6 3 23 385 405 383 405 0.94 4 7 2.3e-05 0.0019 18.6 0.2 1 23 411 433 411 433 0.98 5 7 1.4e-05 0.0012 19.2 0.4 1 23 456 479 456 479 0.96 6 7 0.0011 0.094 13.2 1.3 1 20 486 505 486 507 0.93 7 7 4.3e-06 0.00036 20.9 2.0 2 23 519 541 518 541 0.90
Sequence Information
- Coding Sequence
- ATGTCCAAGTCGAAGTTTTTCCAAGctatgacatatttttttaccaacgaTCAAAATGGCCAACCTCCTAAGAAGAAACCTTCAGCCGAAAAGAGTAAATCTAAAAGAAATCACGACGTTCTAGCAGTTGCGCATGCTCCTCAAATTATCTCAAAACGAAAACTTCGACCACCAGTTATCACTGCCAATCCAAAAATAACCAAAGAAGTAATTGACTTGACAAACGACGAAGATGATATGATGCTTccgatcaaaattcaaatcctcGATGAAACTCGTAACATCACacctattttatttcatattaaaaGAGACGCAGTGGAAGACACCAATGGTTTCTCAACCAATGAACTTTTCAGCCCTGATAAATacattaaaagtgaaaaaacttcTATTGACAATTTAGAAATCTTGTCAAAAGACAATATTattgataattcaattttcgttgatGATATGtccctaaaaaatcaaactgacCCGTTAAAAAACGATGATCCGTTGCTTAAACAGTGCTGTAATCACAACCATTTCGATTTGTCTCGAAATGGAAACGAAGAAGCTAGTCGTGTGAATAAACAAgttgaCAAAACTGGAATTGGGCCAATCAATGTAGGCCAAGAACGTAgttctcaaaaaagaaaacgtaaagtaaatgaaaaatccggGGCAGTTGattctcacaaaaaaactgataaaaagcTTTCctcatctcaaaaaaaacaagtttttcacCTCTCAAAAATCATAAGCATAGAGGATTCTGGTTCATATTATTGTACATTATGTGAACGATCAATTCCCAATAGAAGGATAGTTACAAGTCACGTTCAGTATTATAAAGCAGCGAGAGCTGGATATAAATGCAGCCTCTGCGACGAACGATTTGAATGGAAAGGATATTTAGCTCGGCATATCAAAGAGCACTTCAACTCCAGTGATTCAGAGCCAACTGTAGAATCCGAAgaaattgaaaacgaatttggAATTGAAACTGAGCCAGCGTCGACTTCCTTACTAGACAAATCCACCGTTGACAACCATGAAACCTTCAACAACTTGGAGAAAAAACTGCAGTCGAACAACAGCTCGACTCATGCATCCTTAATAAAACTAGTCACTGATACAGATTGTCGAGATATTAATTTAGCATGCGGATACTGCGATCAATGCTTCAACTCGCAAGTATCATTAGTAGAGCATTGCCAGACCCACGAGGCGGACGGACCatttatttgtaatatttGTGGTACGTTGTTTAAGCAACAAGCAGCCTTAGTATATCATACGCGTATTCATTTCCGAATGATACGAagccgaaaaaagaaaattccatctccTTTCATTAAATACGTATTGAGATTGCATTCGTGCAGTGATTGCGATCTGTCGTATGTTTCGTGGTCTGCACTGAATCAACATAGACTCAGTGTTCATAATTCTGCGGTTGAACGTTTCTTTTGTGACGTTTGCGATCAAGTTTATTACTCGTTGACTCACTTAAATAGGCATAaggaaaaatgtggaaaaattcgtaaagtCTCGAAAAAACAGGTTTGTGAGATATGTGGTAAAAGTTTTCGACAAAAACGTCTCCTGCAGAAACACAAGTTCAACAAACATCGATCTCAatgttga
- Protein Sequence
- MSKSKFFQAMTYFFTNDQNGQPPKKKPSAEKSKSKRNHDVLAVAHAPQIISKRKLRPPVITANPKITKEVIDLTNDEDDMMLPIKIQILDETRNITPILFHIKRDAVEDTNGFSTNELFSPDKYIKSEKTSIDNLEILSKDNIIDNSIFVDDMSLKNQTDPLKNDDPLLKQCCNHNHFDLSRNGNEEASRVNKQVDKTGIGPINVGQERSSQKRKRKVNEKSGAVDSHKKTDKKLSSSQKKQVFHLSKIISIEDSGSYYCTLCERSIPNRRIVTSHVQYYKAARAGYKCSLCDERFEWKGYLARHIKEHFNSSDSEPTVESEEIENEFGIETEPASTSLLDKSTVDNHETFNNLEKKLQSNNSSTHASLIKLVTDTDCRDINLACGYCDQCFNSQVSLVEHCQTHEADGPFICNICGTLFKQQAALVYHTRIHFRMIRSRKKKIPSPFIKYVLRLHSCSDCDLSYVSWSALNQHRLSVHNSAVERFFCDVCDQVYYSLTHLNRHKEKCGKIRKVSKKQVCEICGKSFRQKRLLQKHKFNKHRSQC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -