Basic Information

Insect: Trabutina mannipara
Gene Symbol: lola
Assembly: GCA_900080175.1
Location: FKYK01032904.1:1995-8671[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.2e-05 0.001 19.4 2.5 1 21 18 38 18 39 0.95

2 8 4.9e-05 0.0041 17.5 3.2 1 23 47 70 47 70 0.96

3 8 0.0011 0.095 13.2 0.4 1 21 124 145 124 146 0.93

4 8 3.1e-06 0.00026 21.3 5.0 1 23 154 176 154 176 0.99

5 8 2.4e-05 0.002 18.5 0.4 1 21 198 219 198 220 0.95

6 8 5.5e-05 0.0046 17.4 0.2 2 21 273 293 272 294 0.94

7 8 0.00034 0.029 14.9 1.5 1 21 328 349 328 350 0.94

8 8 2.2e-05 0.0018 18.7 2.4 1 23 358 381 358 381 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.2e-05	0.001	19.4	2.5	1	21	18	38	18	39	0.95
2	8	4.9e-05	0.0041	17.5	3.2	1	23	47	70	47	70	0.96
3	8	0.0011	0.095	13.2	0.4	1	21	124	145	124	146	0.93
4	8	3.1e-06	0.00026	21.3	5.0	1	23	154	176	154	176	0.99
5	8	2.4e-05	0.002	18.5	0.4	1	21	198	219	198	220	0.95
6	8	5.5e-05	0.0046	17.4	0.2	2	21	273	293	272	294	0.94
7	8	0.00034	0.029	14.9	1.5	1	21	328	349	328	350	0.94
8	8	2.2e-05	0.0018	18.7	2.4	1	23	358	381	358	381	0.95

Sequence Information

Coding Sequence: ATGTTCTTGATCACCGACTCGTCGCCGTACTCGTGCAATTTGGATAAAGCACATAGCTGCCCCAACTGCGGAAGATGTTACGTTTCGATGAGTAATCTAAACAGGCATCTCAAATTCCAGTGCGGAGTgcgcagaaaatttaaatgccAACTTTGCAATCGGAGATTCGTGCTTAAACAGCACCTAAAATCGCACATGATCAATATTCATAAATCTTTGTTGGACGATGTCGAACTATATCCAATCcaagatgcaaaaaaaattacgacttcGAAGTTGATTGGGATGGGTATTACATTTGTCCCAATAAATGCGGACgcaaGACCGTGTCGTAGCTTGAAGTATGGTCAAAGTGTCATAATCGCTTACCACGTCTGTCCCAACGCATGTGGTCGCCAGTACAAGTATGCTAAAAATTTGAGACAACATTTGAAGTGGGAGTGCGGCATTGAGCCGCAATTTCAGTGTCAAATTtgcaatcgaaaatttaagcaAAGGGTACACATGAAATCTCATATGTTGACTCATATGAGACGAGAACTGAaaagcgGATCATTTCTCTATCACAACTCTTTGGATCAGACGAAAATATTTGTGTGCAACAATAAATGTGGAAAGACGTATAGATCCAAAGGTGGCTTAATAAATCACCTCAAGTACGAATGCGGAAAAGAGCCTCAATTCGAATATTTCAGCAGAATTCAATGGTCCGAGACAGATCTTTTCATTTTGCCAAGCAGAATTCCTTGCGCCGAGTTTAACGGTTACGCCGATGCCGGATTGAGTACCAACGAAGGATTCGACGGCTACGGCATATCATGCCCTAAAGGGTGTGGAAAAACGTACAAGTACAAGAGCAGCGTTCGTAATCATCTCAGGGAATGCGGAGTCGAACCTCAATTCATTTGTCGAGTGTGTAAACGTCTCGAGTTTCGACGTGGTATTTCGAATAAGTACACCGAAGATGAagaaatattctattttttttgtcctcaACGGTGTGGcagaaaatacaaatataaatGGAACCTAAACCAGCACTTGAAGTACGAATGTGGTAAAGAGAAACAATTCAAATGCGTCAAATGCAGTAAAACATTCGCTCACAAGGGTACCTTAAAATCTCATCTCGTTTCTGTTCATAAATCtttagtaaatattttataa
Protein Sequence: MFLITDSSPYSCNLDKAHSCPNCGRCYVSMSNLNRHLKFQCGVRRKFKCQLCNRRFVLKQHLKSHMINIHKSLLDDVELYPIQDAKKITTSKLIGMGITFVPINADARPCRSLKYGQSVIIAYHVCPNACGRQYKYAKNLRQHLKWECGIEPQFQCQICNRKFKQRVHMKSHMLTHMRRELKSGSFLYHNSLDQTKIFVCNNKCGKTYRSKGGLINHLKYECGKEPQFEYFSRIQWSETDLFILPSRIPCAEFNGYADAGLSTNEGFDGYGISCPKGCGKTYKYKSSVRNHLRECGVEPQFICRVCKRLEFRRGISNKYTEDEEIFYFFCPQRCGRKYKYKWNLNQHLKYECGKEKQFKCVKCSKTFAHKGTLKSHLVSVHKSLVNIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -