Basic Information

Insect: Trabutina mannipara
Gene Symbol: -
Assembly: GCA_900080175.1
Location: FKYK01019761.1:12743-14789[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.8e-05 0.0015 18.9 1.1 1 23 106 128 106 128 0.97

2 10 0.045 3.7 8.2 6.3 1 23 134 156 134 157 0.95

3 10 0.00081 0.067 13.7 5.3 1 23 336 358 336 358 0.98

4 10 0.04 3.3 8.4 0.7 3 19 366 382 364 387 0.92

5 10 0.00013 0.011 16.2 0.6 1 23 392 414 392 414 0.99

6 10 5.1e-06 0.00043 20.6 1.1 1 23 420 443 420 443 0.96

7 10 9.9e-06 0.00083 19.7 2.4 2 23 451 472 451 472 0.98

8 10 0.00095 0.079 13.5 0.7 2 23 479 500 478 500 0.96

9 10 4.6e-08 3.8e-06 27.1 0.4 1 23 506 528 506 528 0.99

10 10 0.0004 0.033 14.7 0.9 1 21 534 554 534 555 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.8e-05	0.0015	18.9	1.1	1	23	106	128	106	128	0.97
2	10	0.045	3.7	8.2	6.3	1	23	134	156	134	157	0.95
3	10	0.00081	0.067	13.7	5.3	1	23	336	358	336	358	0.98
4	10	0.04	3.3	8.4	0.7	3	19	366	382	364	387	0.92
5	10	0.00013	0.011	16.2	0.6	1	23	392	414	392	414	0.99
6	10	5.1e-06	0.00043	20.6	1.1	1	23	420	443	420	443	0.96
7	10	9.9e-06	0.00083	19.7	2.4	2	23	451	472	451	472	0.98
8	10	0.00095	0.079	13.5	0.7	2	23	479	500	478	500	0.96
9	10	4.6e-08	3.8e-06	27.1	0.4	1	23	506	528	506	528	0.99
10	10	0.0004	0.033	14.7	0.9	1	21	534	554	534	555	0.95

Sequence Information

Coding Sequence: TTGGGCGAAGAATTGATGTATCTTTACGTAGAATCAGAAGAGCAAACGTCTGCTGAAAATGAACTTGTGTCTCCGATCGAAAAATACTACCGACGTACACCAAACCGGCTCAATTTGTTATTTCATAATGATTCCGAACAACATTCGGTATTAGAAATCGAAGAGTCTAGTCACGCCGACGTCAGCAAATCCAACATCGAACAAACGAGTACATATTCGGTGGAATTTCCGCAAAGCGATCGTTTCACTGacgttgaattaaaattcgccaatAAAAAACGAACTAAAAACAACGATACTGAAGGAAGCACCTTGTATTCGTGCGAAATTtgtgatatttcattttcggaTAAAACTGACTACCACAAACATGAACTTGTTCATTACGTAGATTACCCTTACGAATGCACGTTTTGTGAAGACCGCTTTAAACgatttaaacaattaaaaaatcataaaatgtaTCATCACAAGCAAGACTTATCCGACGAATATGATTCCAGCACTGAAACTAGTCAGTATTGCAGTAATACAACAGAAGTAGATAAGCAGcctgacaaaaaattcacttgcGTAGAACTTTGGTCTAAACCTATCAAATCCTCATCCAATGatctaagtaaaaatttaaaaaaaaattccgaaaatcgcaaaaaactaGGCAAAATTGATCGAGGGAACCAGTCGTTGAACCTTAGTAAGGAAGACGTCCATATATGTGAGGCGTGTGGTCAAACGTTTTTACCTTCTAGTATTCACAAatgcttaaaatttaaaaccacaTTTATgtTCAAAAGACGCCCTAATATCATCTACAAAACATTCGATCTAGCCTGTGAAATTGAACCCGATGATGGTAAAAAGGAAGGAGGCCAAGAGatgagaaaactaaaaataacacTGAAGAAGAAATCGTGCCATAAAAGCTCGAAGACAAGAAGTGGTAaacgttttaagaaaaaagtaaacgatgAGCAAAATTCCGCAGTAAAAGCAGGTGTTAAATACAATTGCGATAAATGTGACTATAGTACTTCCACGAAAGGCTGTTTTACCACACATTTAAAGCGTCATACTAAACAGTACACTCTATTTTGCGAAGAATGTAACTtgggatttttcaataataccgAACTTACCTCGCACGATATTAAATTCCACAACTCGCAGCCGTTTCAGTGTGCCATTTGTAACGATTTATTCACCTCCAAAGGTAATCTTTATAGTCATATAAAAACCCACGATCCTAATAATTCTTTCGTTTGTGAAATTTGTGGAcgaacttataaaaaaaataacagctATAAACGACATATAGCCAGATCGCATTTAGGTTTAACTACCAAAGCGCAGTGCCTTGTTTGTCAGAAAGTTCTAAGTTCGAAGGAGCATCTGAGAAGACATATGTTGACGCATACCGATGAACGGAATTGGGTATGTTCAACGTGTGGTAAACGCTTCCTCAGTAGAACGTATTTAACTGAGCATTCCCGAATTCATCTCGGCATAAGACCTTATAAATgcgaaatttgcgaaaaagcCTTCACTCAGCGAGGCTCCTTAACCATTCATATACGTTCGCATACCGGAGAAAGACCATATAGGTGCGAATATTGCAGTAAAGGCTTTGTTATGTCAACTCTTCTTAGATACCATTTGAAGAAATGCGGAGAAGCTAAAACGAATTCGCACTCGATTAACAATGCGGCTCTTGTTTCTCAGGTACAGTACAACAACACACCGGTGTATGATAAGTTACCTCCGTCTAATGTGGTAGAGCCTACAGAAATCGACCCTTTAAATAATTGCGCTGTTATTCACAGTACAAAGTAG
Protein Sequence: LGEELMYLYVESEEQTSAENELVSPIEKYYRRTPNRLNLLFHNDSEQHSVLEIEESSHADVSKSNIEQTSTYSVEFPQSDRFTDVELKFANKKRTKNNDTEGSTLYSCEICDISFSDKTDYHKHELVHYVDYPYECTFCEDRFKRFKQLKNHKMYHHKQDLSDEYDSSTETSQYCSNTTEVDKQPDKKFTCVELWSKPIKSSSNDLSKNLKKNSENRKKLGKIDRGNQSLNLSKEDVHICEACGQTFLPSSIHKCLKFKTTFMFKRRPNIIYKTFDLACEIEPDDGKKEGGQEMRKLKITLKKKSCHKSSKTRSGKRFKKKVNDEQNSAVKAGVKYNCDKCDYSTSTKGCFTTHLKRHTKQYTLFCEECNLGFFNNTELTSHDIKFHNSQPFQCAICNDLFTSKGNLYSHIKTHDPNNSFVCEICGRTYKKNNSYKRHIARSHLGLTTKAQCLVCQKVLSSKEHLRRHMLTHTDERNWVCSTCGKRFLSRTYLTEHSRIHLGIRPYKCEICEKAFTQRGSLTIHIRSHTGERPYRCEYCSKGFVMSTLLRYHLKKCGEAKTNSHSINNAALVSQVQYNNTPVYDKLPPSNVVEPTEIDPLNNCAVIHSTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01150682;
90% Identity: -
80% Identity: -