Tman009852.1
Basic Information
- Insect
- Trabutina mannipara
- Gene Symbol
- -
- Assembly
- GCA_900080175.1
- Location
- FKYK01016208.1:2208-4130[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.2e-05 0.0043 17.5 5.3 1 23 109 131 109 131 0.98 2 17 0.0055 0.46 11.1 5.1 1 23 136 158 136 158 0.98 3 17 0.0049 0.41 11.3 1.6 2 20 166 184 165 186 0.92 4 17 0.0012 0.099 13.2 0.5 2 23 192 214 191 214 0.95 5 17 0.0009 0.075 13.6 0.4 2 23 233 253 232 253 0.95 6 17 1.3e-05 0.0011 19.4 0.1 1 21 259 279 259 280 0.95 7 17 1.2e-05 0.001 19.5 3.6 1 23 287 309 287 309 0.98 8 17 0.45 38 5.1 2.0 2 23 320 342 319 342 0.95 9 17 0.0001 0.0083 16.6 2.3 1 21 348 368 348 369 0.94 10 17 0.0011 0.095 13.2 0.1 3 23 373 394 371 394 0.93 11 17 0.0002 0.016 15.6 0.4 1 21 415 435 415 436 0.93 12 17 0.0011 0.092 13.3 0.2 2 23 439 461 438 461 0.94 13 17 3.6e-05 0.003 18.0 0.4 1 23 488 510 488 510 0.98 14 17 3.4e-05 0.0028 18.1 1.3 1 20 516 535 516 537 0.96 15 17 2.5e-06 0.00021 21.6 0.9 1 23 544 567 544 567 0.96 16 17 0.0039 0.33 11.5 2.3 1 23 572 594 572 594 0.94 17 17 0.039 3.2 8.4 3.4 1 23 600 623 600 623 0.96
Sequence Information
- Coding Sequence
- ATGCCACCAACGTCCTCTGTCTTCATATGCGAACCAGACGATACGTTAGGATCTGAGAACACCGCAAATGCCTCGAAAGTTCACCTTACGGATCCTCGAATTCCGCCtgatttcgagaaatttctaCGCCAGCACACGAACCGCATCAAATACATGCAGTGCGACAAATGCGACTTTATCTGTCGACCTTTCATGACTGTGTTCTTGAGACATTACAAGAATCACGTGGATATGACAGAAACGTCCATTTTTGCCAACTACATCGCAGAATTGAACTCGGGCTCGGTGAACGAGACCGACTGCCGAgaagctattaaaaaaaaattccagtgtAGTAAATGTACGAAATCTTTCAACAAACTTAAAGGATTGTGTcgtcatttgaaaatacacgAGACACATGTCTACCGTTGCAACCAATGCGAATGCAGGTTCAAAACAAAACTGGCATTCAGGGCACATAAAGAAAGGCATCGACGTGCGAAAGAGCTATTGCATTGCGACCAATGCGACAAGTACTTCAGATCGAAAGACGGTTACAAATATCACCGCGAAAACAAATGTATCTTGAGTAAATGCCATCTATGTGAGCTAACCTTTGGTCAAGCAGCAGGTCTGAAGGAGCACTTGAAGGAAAGCCACGATGTAGCCATGTCGGACGCAGAACACGAACGCCAATTGGAGACTCAGACTAGTATGTGTTTCATATGCGGTAAAATAGTCAAAGATAGTAATCTCAAGCGTCACATGATGATCCACATGGAAGAGAAACCCTTCGTATGTGACTTGTGcggtaaaagtttcaaattcaagAGCGCCATTCGAGATCACATGATGGTTAAGTTAGGAATGAAAGACTACGTTTGCGAAATCTGCGGCAGGAAGTTCGTCAAGAAGTGTTACCTCAGTAAACATATCCGGTTCCACACGGGCAGCAAAGAAGATCCGAAGAATTTGGAATGCGACCTTTGCTGCAAGAAATTCACAGACGTGAAGGTATATAATTCGCATAGAAACACGCCTCACCGTTCGGAAAAACCCTTCTCGTGCGATTTATGCAATAAATCGTATACTACGAAAGCCTGCTTACGCCAGCATCTTCTCAGAGAAGTCATATGTGTCCTGTGTGATGAAATATTTGCCACTAACGATTTACTCAAACAACACGTTACCTCGTTTCACACCTTAGATCAGTATAGAGAAGCTGTCAATGACGAAAACGATGTGAGCGCAGCTTTCGTATACCCTTGCGAAATTTGCGGTCGTAAGTTCACCTCCGAAGACCGCTATAAACAACATAAATTAACCGAATTGAATTGCGACTTTTGTAGTGCTCAATTCACCCAAAATGAAGATCTCAAAATGCATATCGAAATCGAGCACGACCCGACTGAGTATCGCAAAGTGATGTCTCTTCgatggaaaaaacaaatcaaactAGGCGGCGCCAAGGCAGCCGAATACCCTTGTGATATATGCGGTAAGAAGTTATTCTACAGGCGAACTTTGGCTCTTCATATGCGCATACACTCCGGTCTGAAACCGTACAAGTGCCAATACTGCAATAAAGCTTACATCAGCAAGCATTCGTTGAATACGCATCTCGTCTCTGAAATGAATCTACGTAAGTTCGTATGCTCTTATTGTGGCAAAAGGTACAATTTCAATTCGGATCTGATTGTTCATATTAAGCAACGCCACGAGTCTAGACAGTTTAGTTGTCACGTTTGTGGCAAAAAGTTTGGCTTGATGAAGTACCTGAAAGATCATTCGACTATTCACTCGCAAATCAAGCCCTTCAATTGTGATAAATGCAAGTTAGGATTTAGATTGAGGAAGTTTTTAATCAGACATAATAAAAAGTATCATTCTGGTAACGAAGATGAACATGTTTTCTATATCGAAGTAGGCACTGATGAATGA
- Protein Sequence
- MPPTSSVFICEPDDTLGSENTANASKVHLTDPRIPPDFEKFLRQHTNRIKYMQCDKCDFICRPFMTVFLRHYKNHVDMTETSIFANYIAELNSGSVNETDCREAIKKKFQCSKCTKSFNKLKGLCRHLKIHETHVYRCNQCECRFKTKLAFRAHKERHRRAKELLHCDQCDKYFRSKDGYKYHRENKCILSKCHLCELTFGQAAGLKEHLKESHDVAMSDAEHERQLETQTSMCFICGKIVKDSNLKRHMMIHMEEKPFVCDLCGKSFKFKSAIRDHMMVKLGMKDYVCEICGRKFVKKCYLSKHIRFHTGSKEDPKNLECDLCCKKFTDVKVYNSHRNTPHRSEKPFSCDLCNKSYTTKACLRQHLLREVICVLCDEIFATNDLLKQHVTSFHTLDQYREAVNDENDVSAAFVYPCEICGRKFTSEDRYKQHKLTELNCDFCSAQFTQNEDLKMHIEIEHDPTEYRKVMSLRWKKQIKLGGAKAAEYPCDICGKKLFYRRTLALHMRIHSGLKPYKCQYCNKAYISKHSLNTHLVSEMNLRKFVCSYCGKRYNFNSDLIVHIKQRHESRQFSCHVCGKKFGLMKYLKDHSTIHSQIKPFNCDKCKLGFRLRKFLIRHNKKYHSGNEDEHVFYIEVGTDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -