Tman012465.1
Basic Information
- Insect
- Trabutina mannipara
- Gene Symbol
- -
- Assembly
- GCA_900080175.1
- Location
- FKYK01018629.1:4259-8118[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0063 0.53 10.9 0.7 1 23 106 128 106 128 0.96 2 18 8.6e-06 0.00071 19.9 2.7 2 23 135 156 134 156 0.97 3 18 1.8e-05 0.0015 18.9 4.0 1 23 162 184 162 184 0.97 4 18 0.077 6.4 7.5 6.4 1 23 190 212 190 212 0.97 5 18 5.2e-06 0.00044 20.6 7.5 1 23 218 240 218 240 0.98 6 18 6.6e-06 0.00055 20.3 0.4 1 23 246 269 246 269 0.97 7 18 0.0014 0.12 13.0 2.5 1 23 509 531 509 531 0.99 8 18 0.00064 0.053 14.0 7.3 3 23 539 560 537 560 0.95 9 18 0.00017 0.014 15.9 1.9 1 23 566 588 566 588 0.95 10 18 2.5e-05 0.0021 18.4 5.1 1 23 594 616 594 616 0.98 11 18 1.1 95 3.8 5.4 1 23 622 644 622 644 0.92 12 18 0.00082 0.068 13.7 0.9 1 23 649 671 649 671 0.98 13 18 4.6e-06 0.00039 20.8 0.7 1 23 686 708 686 708 0.98 14 18 0.022 1.8 9.2 5.0 1 23 714 736 714 736 0.97 15 18 0.00037 0.031 14.8 0.2 1 19 742 760 742 762 0.96 16 18 0.12 10 6.8 4.7 1 23 770 792 770 792 0.98 17 18 0.00081 0.067 13.7 3.4 1 23 798 821 798 821 0.93 18 18 1.7e-05 0.0014 19.0 1.0 2 23 827 848 826 848 0.97
Sequence Information
- Coding Sequence
- ATGGATAATCCGTTGCAGGAAGAAGATATTCCTCCAGCTCTACCAATTTTCCCGAAACTCGTTCATACcaATGATCCTAAAGAAATCAAGCATTTACTGACGAAGGTAGAAACTCTAGTCGATGCGTCTTTAGAAACAGTGATGAACGTAGATTATGGAATTCAGCAAGTCGACACACGAGtgaaaaacttcttaaaaaagcaaatcgaaagaaaagcTGGAGGCCTCCGTAAACTGAAAAGACGCGCTGAAAAGTGTGCAGATATAATAAAACCAGAAcgttcgaaagaaaaatcaccCAAAGAACTCAAAACGTACGCCTGCAAAATTTGCAATCAAGTGTTTCAATTACGCAAAGATATGGTGAAACATAAATCCATTCATTCTGAACCGGAAGAAATCAAGTGTTCAATTTGTGGCAAAGAATTCAATACGAAACACGGTTTAACGCAACACAACAAAACTCacgtcgtcgaaaaaaaattcatttgtgaTTACTGCTCGATGTCTTTCCGAACGAAGTGTTCTCTACGTCGTCATATAATTCGCCACCTAGGTATAACGCGATACAAATGCAGATTTTGTAAGAAGAAGATATTCCAAAAACACCATCTGATAGTCCACGAAAGAGGTCACACCGGAGAAAAACCCTTCAAATGCCATATTTGCCATACCTCGTTCATTTCTAAAGGAAATTTACAACACCACTTACGTAATCATTCTGATAAAAAACCGTTCCCTTGTAAGTTTTGCGAAGAAGCTTTCAAAACCCGATGGACTCTGAATGCTCATATTCGTAAAGAACATTCAGCAGCTCAAAACAACGTTCTACGTGGCGttcctgaaaaattagtcGTAACGCCTGAATTGATTAACACTGCCCAAATAaatgataataaaaacaacgaaGAAAATACTGTAATCGAGACTGAAACCAAACTTGACGTTTCCGAAAGCGAAGAGAAACGTGCCAAAGTAGTAGATGAAGAAACTGATGACGATGATCGTCTTTATGAGgGCACTCAAGAAGAGTTTTCAGAATACGAATTTTCAGATCAAGAAGAAATTCAATCGGAGGAGACATTCGAATATAGTGGGATTCGAACTCGTAGCAGTGTcaataaaaagattaattcgaaaattgataaacatgAAGAAAAACTTAGTGACGAAGACGACAATAAGAAGAAAGTTCCTaataaaagaaaacaaacgaaaccaagatgtatcaaaaaatctaaatctgaTGCTGGCATTGAAAACAGTAACGATCACTGTGATGTCGATTCTTCGttggaaaataaagaaaatcagatttgcaAAGGTCAAGATACAGTTCCCGAAGACTCAGACGGTAATATGATGAGTCCTGAAAGTATAGAAAAGTTTCCAGTTGTTGAGAAGaaaaaaaaatattcaaaatctaggaaaatttcaaaatctaaaaaaagaacaaaacctACGGCACGTAAACGTCATTCTAAATCGGAAAAAGAATCAGCTGCATCCAATACTGACAGACCGTATAAATGTAAAAGATGCGATGCCACTTTTGCCATCAAGAAATGTTTGGTCAGTCATCAAATTACACACACCGAAGAAAAACTGCACCTTTGTTCGTACTGCAGCACGAGCTACAAACATAGacataatttattgaaacatATTCGAGTAAGCCACACGGATGAGAAACGTTTCTTGTGTAATTACTGCGGTGCTAAATTTGCTCTCAAAGATACGCTCGAGAGACACACACATACCCATACAAACGAACGTCCCTTCAAGTGCGAATACTGTAAAGCCACATTTAGCCAAAAGTATCACATAAGGATGCATATGCGTAATCATATGGGCGACAATCCTTACCTTTGTACATTTTGTAACGCCACTTTTACTAATCATACTTCCTTATCATGTCATCTACTTCAACATACCGGTCAACGATTCGAATGCCCGATTTGTCATTTGGAATTTAAATCCGGCCAGAGTCTCGGTCAACACCGAAGATTACATTCGCCGGTCTCTAATAAACGTTTTCAAACCTTCGACAAAATGTTCCAATGTGATATTTGTCAGCTATCGTATAAATCGAGGAGTACTTTGAAAGCTCACTTGATCTCGCACACCGACGAGAAACCTTACCAATGTTACATATGCGACATGCAGTTCAAATACAGACGTAATTTGCAATGCCATGTCTTCACTCATACTGGAGAAAGGCCCTACAAATGTGAAATTTGTGGCAGTGGATTCAGGCAGAGGGTTAGTTTGAAAACGCATTCCTTGTGTCATACGAACGAGCGACCTTTCAAATGTGAATTCTGCGAGGCTacttttaaatgtaaaaaggCTCTCAACGAGCACCTTCACATTCACGATGGTGCCGGTCAATTTAAATGCGACCAATGCGATActacttttaaattgaaacgatATTTGAGACAGCATGTGTATTACACGCATAATAAACCTCCGTCAGTTTGTTCTATTTGCAAAGCTGTCTTTAAATACGAAAGATCTCTCAGACGGCACATGCAAAAACATTCCGAAACTGTTGAAATAAATAGTAAGGGTAATATGACGTATGATTTTCAATCGTCAATATTGTGA
- Protein Sequence
- MDNPLQEEDIPPALPIFPKLVHTNDPKEIKHLLTKVETLVDASLETVMNVDYGIQQVDTRVKNFLKKQIERKAGGLRKLKRRAEKCADIIKPERSKEKSPKELKTYACKICNQVFQLRKDMVKHKSIHSEPEEIKCSICGKEFNTKHGLTQHNKTHVVEKKFICDYCSMSFRTKCSLRRHIIRHLGITRYKCRFCKKKIFQKHHLIVHERGHTGEKPFKCHICHTSFISKGNLQHHLRNHSDKKPFPCKFCEEAFKTRWTLNAHIRKEHSAAQNNVLRGVPEKLVVTPELINTAQINDNKNNEENTVIETETKLDVSESEEKRAKVVDEETDDDDRLYEGTQEEFSEYEFSDQEEIQSEETFEYSGIRTRSSVNKKINSKIDKHEEKLSDEDDNKKKVPNKRKQTKPRCIKKSKSDAGIENSNDHCDVDSSLENKENQICKGQDTVPEDSDGNMMSPESIEKFPVVEKKKKYSKSRKISKSKKRTKPTARKRHSKSEKESAASNTDRPYKCKRCDATFAIKKCLVSHQITHTEEKLHLCSYCSTSYKHRHNLLKHIRVSHTDEKRFLCNYCGAKFALKDTLERHTHTHTNERPFKCEYCKATFSQKYHIRMHMRNHMGDNPYLCTFCNATFTNHTSLSCHLLQHTGQRFECPICHLEFKSGQSLGQHRRLHSPVSNKRFQTFDKMFQCDICQLSYKSRSTLKAHLISHTDEKPYQCYICDMQFKYRRNLQCHVFTHTGERPYKCEICGSGFRQRVSLKTHSLCHTNERPFKCEFCEATFKCKKALNEHLHIHDGAGQFKCDQCDTTFKLKRYLRQHVYYTHNKPPSVCSICKAVFKYERSLRRHMQKHSETVEINSKGNMTYDFQSSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -