Tman007304.1
Basic Information
- Insect
- Trabutina mannipara
- Gene Symbol
- -
- Assembly
- GCA_900080175.1
- Location
- FKYK01025564.1:4495-8413[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.3e-07 0.00016 21.3 0.0 2 44 15 57 14 58 0.89 2 2 1.3 9e+02 -0.3 0.0 14 24 129 139 125 140 0.81
Sequence Information
- Coding Sequence
- atggGAAAGTACATTAGAAAAACTACGAGAGGGTCGTGGACTCAAGAAAGTCTTGAAAATGCAATGGTGGCTGTtaaagatgagaaaattccGATCAGAGAAGCTGCCCGTAGTCATGGAATTCCAGAAAGAACGCTCAGACGTCgtttaatgaataataattctaaaaagcTCTCTCTAGGGAGGGAATCATCCCTCAGCAGTATTGCTGAATCCAGATTAGCATCGCACATCATTAAACTACAAGATGCAGGGTTCGCACCGACAAAAAAAGTAGTGACACGGTTGGCTTATAGCATCTCTGTGGCAATGAATAAAAAGACTTCGTtcaacgagttgaaaaaaagagctgGCAAGGACTGGTTCAAGAATTTTATGACTCGAAATCCTCAACTGAGTGTTCGAAAAGCTCAGTCGTTATCACTAGCACGAGCGGAAGGTATGAATCGGCTGGAAGTAGCAAATCATttcgaattgttgaaaaaagtgcttgttgaaaatgatttaataaaCAAACCAAGTAATATCTTCAATATGGATGAATCTGGTATCCAACTCAATGGTGATCCTGATCGTGTTATTGCCCAGAGAGGTTCAAAAACAGTGCACGTTATAAACTCGGCTGAAAGAGGAGAAACTGTAACAGTGACGGCTTGCTGCAACGCCGAGGGCCACTTTTTACCACCTTACTGCATCATGAAAGGTGTGAACAAGAAAGCAGAGTATGAAGATCATCTCCCACCAGGGGGCACtgttaaaatgaatagaaaatcgGCATATAGTAACGGCGACGTATTTATggattggttgaaaaatcatttcattccGCGAAAACCTCCAGGAAAGGTTCTACTCATTCTCGATGGACACGCATCCCATATGAATTCGTTGAAGCAAACGATATTATTCTACTTTTGGAGCGATGCCTGTAGTGTTTTTGTTGATGGACATCCTGGAAGAAGAATTACCCGTTTACAATTTGGTGAATTACTATCAAAAGCTTGGAAAAAAGCGGCGACCATTGAGACTGGTGCTAACGGGTTCGTAGCAACAGGAATCTACCCATTTGATCCAAATGTAGTTCCAGAACGAGCTTACCTAAAATCAAACGTGCTGAACCAACCACTCACGCCAGCTTCAAATTCCTCATCCTCCGGCACATGCACGCCGATTACGCCAACAGAAGAAATTACTCcgtcaaaaatcatcaattctaTTTCTACCATTCCTGTGCTACCCGAACGAACAaatcaaagaagaaaacaacATGCTATGGTTCTTGACAGTGATGCtttccgaaaaaaagcGAACGCGAATCTCGAaacaaaaactacaaaatctaaaacagtgaaaaaaaatctttaccaAACTCATCATTCCGAATCCGAAGATGATCCAGAACCATTAATCGATGAACTgccaaaaaaaaagAATGCCAAAACAAGGAAACGCACGAGAAAAGATTCTTCCTCAAGTTCGGAATTGGAACACTTGCCGTTGCCATTGGATGATTCCCTATCTAGTGAAACCTTTTCTGATCTTGAAAATCCGCcaacaaaaaatgatgatgTCGCCGTCAATACAAACAATTTGGAAGTcggaaatttcgttttcgcgAAGTACGAATGCGGCTCTACTTCAAAAAGtcctaaattcaaattttttgtcggcAAAATTGTCGAAGTTTTGCCCAACCaaactttcaaattgaaaagcaTGCGGCTGAGCTTAACCTCAAACAATCCGAATTCGTTTCACTTCCCTATAAAAGATGATTTCATTGACGTTCCACTTCCTCATATTGTACGGGCAATAACTGTAATTTCAAATGCGAAAGCCACTAAACGTCAACAGAACATTTTAAACTTtgATGAATGCGTTTCGATTGCTGCTGATAATGCTGATACgacgtcatcgtcgtcgaatCTTACACTCAcgccattaaaaaatatcattcaagACGAAAATACTGCCCTACAAAACGAGTCAATTGATCGAACCTATACGATATTATCACCGCCGAATATTACATCGCCGCCGAATATTACGTTGTTAACTCAATCAGAAAATGTATCTCAAGATGGATTGGCTACTGAAGAAGGCGAGTCAATTGATCGTACCTGTATGATATCACCGCCGAATATTACGTCAACTCAGTCAGAAAATGTGTCTCAAGATGAATTGGCCACTGAAGAAGATGAGTCAATTCATCAGTCATCTTGGTTAAACAGACCAGGTACTTCGAACGAACAATCAAACCAGTCtacaaatgaacaaaaaaagccGAGATCAAAATTTCCGGAACCCGAAAAGTGGCAGCGtaatgttagaaaaaaaaatcgactaacAAATGTGACCTACAAAGATAATAAAGGACGTACTGTAGAACCAAAGGAACTCGACACAACTGACTGTGAATGTAAATACCAATGTAggagtaaaatttcgattgcCAGACAACAGACATTATTCAAGGACTATTACACTGTTGGGACTTACAATCGCCAGAAAGATCTTTTGTGTAAATTCGTTAAAGAAGTGCCAGTTACTCGcaaaagaaagagaaacatGTCATCTGGTATTGAAAAAGGTCACAGTAAAATTTACACGTTACTATCTGAAGACGCAGACTATGTAAGAGTTTGTCAGCCATTCTTTCTgcgaactttcaaaatatcgaaaagtgTTGTAAACACTGCCTTGGGTCAAGTCAGTCCTGGTGGAACTTATCGGGGAAGAGATAATCGTTTGGGCAGAGCAGCTCCTAATGAAACGCCACCTCATCTTGTTCGCCgtgtcaagaaatttttaaatgacttcCCAAAAGTTGAATCCCATTACTGTCGAGCGAGGAGTTCGAGGTTGTATTTCACCCCTGATTTAAATATCAACATTCTTTATCAACTTTACTGTGAGAAACAACAAGCCGATGGAGCCGACATCGTCAAGAGTGGTGtgttccgaaaaattttccacgaattTCAGCCATCCCTAGCTGTATTTACGCCCAAAAAGGATCAATGTAGAGTATAG
- Protein Sequence
- MGKYIRKTTRGSWTQESLENAMVAVKDEKIPIREAARSHGIPERTLRRRLMNNNSKKLSLGRESSLSSIAESRLASHIIKLQDAGFAPTKKVVTRLAYSISVAMNKKTSFNELKKRAGKDWFKNFMTRNPQLSVRKAQSLSLARAEGMNRLEVANHFELLKKVLVENDLINKPSNIFNMDESGIQLNGDPDRVIAQRGSKTVHVINSAERGETVTVTACCNAEGHFLPPYCIMKGVNKKAEYEDHLPPGGTVKMNRKSAYSNGDVFMDWLKNHFIPRKPPGKVLLILDGHASHMNSLKQTILFYFWSDACSVFVDGHPGRRITRLQFGELLSKAWKKAATIETGANGFVATGIYPFDPNVVPERAYLKSNVLNQPLTPASNSSSSGTCTPITPTEEITPSKIINSISTIPVLPERTNQRRKQHAMVLDSDAFRKKANANLETKTTKSKTVKKNLYQTHHSESEDDPEPLIDELPKKKNAKTRKRTRKDSSSSSELEHLPLPLDDSLSSETFSDLENPPTKNDDVAVNTNNLEVGNFVFAKYECGSTSKSPKFKFFVGKIVEVLPNQTFKLKSMRLSLTSNNPNSFHFPIKDDFIDVPLPHIVRAITVISNAKATKRQQNILNFDECVSIAADNADTTSSSSNLTLTPLKNIIQDENTALQNESIDRTYTILSPPNITSPPNITLLTQSENVSQDGLATEEGESIDRTCMISPPNITSTQSENVSQDELATEEDESIHQSSWLNRPGTSNEQSNQSTNEQKKPRSKFPEPEKWQRNVRKKNRLTNVTYKDNKGRTVEPKELDTTDCECKYQCRSKISIARQQTLFKDYYTVGTYNRQKDLLCKFVKEVPVTRKRKRNMSSGIEKGHSKIYTLLSEDADYVRVCQPFFLRTFKISKSVVNTALGQVSPGGTYRGRDNRLGRAAPNETPPHLVRRVKKFLNDFPKVESHYCRARSSRLYFTPDLNINILYQLYCEKQQADGADIVKSGVFRKIFHEFQPSLAVFTPKKDQCRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -