Tman001392.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trabutina mannipara
Gene Symbol
-
Assembly
GCA_900080175.1
Location
FKYK01020213.1:30116-34286[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.8e-09 6.2e-06 25.9 0.0 2 35 486 520 485 527 0.89

Sequence Information

Coding Sequence
ATGGACGATAAATGTCGTTTGTGTGGCATCagcgatcaaaatttggtcaatttatTTGAAGATAACAGACTATTTGCTAATTTAAACTTGAGGATTtgcataaatttacaaattaaaATTTCTTCGACAGATCAGTTATCTCATTCCATCTGCCAGCTTTGCTATGTTAAACTCgaagatttcgataaatttattaaacaatGTCAAATGTACCAATTTGTCTTGGTAGACGTTGATAAAACTGTGCATTCACCTATTCAAGAGCAAACTTCGACGTTGAATTCAGAATGCGCTCCATTGTGCACAGATCGTTTGTCGTCGGATTTCAGTGACAACTTTTTAGAAGAAGGCGAAAATGAAGAAcctttgaaaatgatgaaattaccTCATGATTTTCAAGAGAACAGCGATGATATGGTCTTGGAAGAGGAAGAAATAGAAATAGACTTGGATGACTACgaggatgaaaaattacccgatGATTCGAAGCAAAATATATCCTCCCAGAACGTACCTTTCAGTAAattggtttcgtttttttcttcaagggTACGAGTCAATAAATTGAACTTAAGTGATGAAAATCACGACTTGAAGTCAAATTCCAAAGTTGATCCAAGCGCTGAATCGAATATTAGAGTGATTGACTCAGAAAATGATCACAAAATagctgaaataaaatacgaagaaacAGAATCAGAAACTATTTTAGACAAAAAGTACTCTCAAAGTGACGAATTTAAAGCAAATTTCTACGAAATGGacgtcaaaaaagaaaataaaacatttcccaaagatattaaaattcgAAATCCTACTACAACATCAAAATCATCTCATCTGAAAAGCTGTCCTTTATGTGCCCATCAGTTCGCACCAAATGAATTGGAAGATCACGTAAAATTCCATTCAAATGATCAAGAATATATGGATTTAATTATAGCCGAAATGAAAGAAGTTCCTTTCAAGCACAAAATGCATTATTGTGCGGAATGTAAGAAAGTTTTCGTACGAGacagtttatttttagaacataAAAAAGAGCacctgaaaatcaaaataatcaattgtCATTTATGCGATCacactttttcaattcgtaaaaaactCAAAGTACACCTGCGCGCGGTACATATtccaaaaagtaataaatgtAGTTTATGTAGCTATGCTGCCAAATCGTACGCAGACTTACAAAAACATATCAAAGGTGTTCACGAATTTCAACCtattatttgtgaaatttgcGGTAAATCAGTTTCTTGTAACATAAGTAATTATAATAGGCATTTGCAGACCCATTCGGAGGAAAGACCGTATAAATGCGAATTGTGCGTATCGTCTTATAAAACGGCTGCATCTTTGCAGAAACACAAAATTAATATACATTTTCCTAAATCCGTTATGTGTACGGCTTGCGAATCCTCCGAACCTTTGAAATGTAGAAAATACACTCCATCTAAGCTACGAAGTGCCATCAATGATGTACGAACGGGTAGGCTGAAAGTTGTAGAAGCGTGTAGAGTTTATGATATTCCTCGAACAACGCTGTATTTCAAGTTATCCGGAGGTAGGCCAGAAGAATTCTGTCGTCCAGGTCCTTCCGCTATTCTAGGTTTagaagttgaaaccaaaattgaatCTTGGCTAATGGACAACTATAGGCGCGGATTTACTCTGAGTAAAAACGGTTTAATgtattctgttaaaaaaattatcgaacaaTATCCGGAACACGTGAGGCATAAGTTACCCTTTAAAAACAATATGCCTGGCAGAAAATGGTTTGCTAGTTTTAAAAGTAGGCATCCTAAAATCGTGGAAAAACTTAGCGAGCATAAATACTTGACTAAAGTGAATATTACCGAAAGCAAAATACGGGATTGGTATGCTAAAGTGAAATCTTTGATAGAAGAAGAAGCAGCCACTGACGTTCTTCACTGCCCAAATAGAATTTATTACATTGATGAAATGTGTATGTTTGTGAATAACAAAGGCGAATTGTCATTTACCGATAAACGAAAAGCGATTTATAATGCTTCGCATAACTACATCGACGACTTGACTATTTTGTTCGTGGCAAATGCTACTGGTAATTTTGCTCCTCCTGCGGCtgtgtataaattaaaaagtgtacCAAGCGAGAAGTTGAAATATATTCCTTCGCATTGGTCGGTGGGCTTCACCAAATCCGGTTGGAATAATTGTGAAACTTTCTATGAATACATAACAGAAACgttttatccttttttaatcaagtctAGTACTCAGTTCCCTGTAATCGTTTTCCTCGATGCTAATTTTTCCTGCTTGAGTCTACCTTTAAGTTCATTTTGTGAAGAGCATGGCATAATTTTACTTTGTACGTTACCAAAATCTGTACATTATTTACAACCGCTCCACGGATTTTTCTCCTTAATTAGAactgtttggaaaaatgaactgaACGAGTGGCTGAACGAACGTAAAGAGGAAAACGAGTCTACCGACTGTCAAATTCCTCCTTTAGttgattcaattttggaaaaaaaaatttttgaatcgactGTCGTTGAAGGATTTCGTCTTGGTAGATTGTatccttttgaaattaaattagaagGTGCCAATGATCCGCTGTTACCTCttgaattagaaaatgatGATGCGGAAAAAATGTGCGACTGTAATTTAAGCATTATTGAGTACGTCGAAAGTAAAATTCCACCGGAAATCCTTAGCAAGTTTCACGCTTGTAAAATGAAAGGCGTTCCTTGGACAGGATACGTTGGGTATAGCGCTCTATACGATCTATGGACTGACGTTATCGCTGAAAATGGTTTATCTGACGTTAAGGAAGATTCTGAACAGCACCTGATTTTGCTTGAACCTGACGCTTTAGAGCAATTTGTAGTAGAAGAAGAGATAGAAGAGAGTCAATAA
Protein Sequence
MDDKCRLCGISDQNLVNLFEDNRLFANLNLRICINLQIKISSTDQLSHSICQLCYVKLEDFDKFIKQCQMYQFVLVDVDKTVHSPIQEQTSTLNSECAPLCTDRLSSDFSDNFLEEGENEEPLKMMKLPHDFQENSDDMVLEEEEIEIDLDDYEDEKLPDDSKQNISSQNVPFSKLVSFFSSRVRVNKLNLSDENHDLKSNSKVDPSAESNIRVIDSENDHKIAEIKYEETESETILDKKYSQSDEFKANFYEMDVKKENKTFPKDIKIRNPTTTSKSSHLKSCPLCAHQFAPNELEDHVKFHSNDQEYMDLIIAEMKEVPFKHKMHYCAECKKVFVRDSLFLEHKKEHLKIKIINCHLCDHTFSIRKKLKVHLRAVHIPKSNKCSLCSYAAKSYADLQKHIKGVHEFQPIICEICGKSVSCNISNYNRHLQTHSEERPYKCELCVSSYKTAASLQKHKINIHFPKSVMCTACESSEPLKCRKYTPSKLRSAINDVRTGRLKVVEACRVYDIPRTTLYFKLSGGRPEEFCRPGPSAILGLEVETKIESWLMDNYRRGFTLSKNGLMYSVKKIIEQYPEHVRHKLPFKNNMPGRKWFASFKSRHPKIVEKLSEHKYLTKVNITESKIRDWYAKVKSLIEEEAATDVLHCPNRIYYIDEMCMFVNNKGELSFTDKRKAIYNASHNYIDDLTILFVANATGNFAPPAAVYKLKSVPSEKLKYIPSHWSVGFTKSGWNNCETFYEYITETFYPFLIKSSTQFPVIVFLDANFSCLSLPLSSFCEEHGIILLCTLPKSVHYLQPLHGFFSLIRTVWKNELNEWLNERKEENESTDCQIPPLVDSILEKKIFESTVVEGFRLGRLYPFEIKLEGANDPLLPLELENDDAEKMCDCNLSIIEYVESKIPPEILSKFHACKMKGVPWTGYVGYSALYDLWTDVIAENGLSDVKEDSEQHLILLEPDALEQFVVEEEIEESQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01472813;
90% Identity
iTF_01472813;
80% Identity
iTF_01472813;