Tman017968.1
Basic Information
- Insect
- Trabutina mannipara
- Gene Symbol
- -
- Assembly
- GCA_900080175.1
- Location
- FKYK01021610.1:7994-8812[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-10 1.3e-07 31.3 0.0 3 35 64 97 62 106 0.86 2 2 6.2 4.3e+03 -2.5 0.1 29 43 220 234 220 236 0.83
Sequence Information
- Coding Sequence
- ATGGTACTATGCTGCCTGTGTCCCATTTTAGATTACGCGTCAGCAGCATCGACGTCCGCTTCGGCGGCGACCAGCGGAGGTGCCGCTCAAAGCAGCGGTACCAGCTCATCTTCGGGTTCGGGTTCGGGTTCGTCGTCGTCTGCGACCGCCTCAGGTTCGCTGAAACTGAAGGTGCCGACGTGGACCCAAGCCCAACTCAAGGAAGCCATCCAGGCGGTGGTCACGCAGCAGATGCGTTTCACTCAGGCGTCCACGTACTTCGGCATCCCAAAGGGTACCCTGTACGATAACATACTGGGCAAAACGAAACGCATGCAGGCGCTAGAAGAAGCCGCCCTCAGCCAAGAAGAGGAAACGGCGGTGCTGGAGTTCTGCTGCCAGATATCCGAGTCTCCGTACAACCGTCGTACTCGTAAATCGCTCAACGACGTTTTGACCTTCGTGTCGAACCTGAGGCAGAGGAAAGACCCGGCTTTCGAATTCAAAGGACTGTCCGGCTTCAGATGGTGGTGGgcgttttgcaaaaaacacaGCATAGTTTCGTTGCACTATTCGGGGGCCGGAGCGGCGTTCGGCAAGTGCCACGACTACGACGATCAACCGTACGATTTCTCGACGGGCCGCGACGCCCCGAAGACGATGCCCCAAACGGCGGGCCCGTACAGTCCTCTGCAccagtatttgaaattatccgTCGAGTCGTCGCTGACGTCCTACAATAACGGCAATGCGGGCGGCGCGGCTGGCGCGGTAGGCGGCCCGGCCAATTTCCAGATTATTCAGGAAATTCACGCCAAAACGTCTCCGATATgccattaa
- Protein Sequence
- MVLCCLCPILDYASAASTSASAATSGGAAQSSGTSSSSGSGSGSSSSATASGSLKLKVPTWTQAQLKEAIQAVVTQQMRFTQASTYFGIPKGTLYDNILGKTKRMQALEEAALSQEEETAVLEFCCQISESPYNRRTRKSLNDVLTFVSNLRQRKDPAFEFKGLSGFRWWWAFCKKHSIVSLHYSGAGAAFGKCHDYDDQPYDFSTGRDAPKTMPQTAGPYSPLHQYLKLSVESSLTSYNNGNAGGAAGAVGGPANFQIIQEIHAKTSPICH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01490886; iTF_01262366;
- 90% Identity
- -
- 80% Identity
- -