Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 3e-17 2.1e-14 53.0 0.0 1 44 59 102 59 103 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	3e-17	2.1e-14	53.0	0.0	1	44	59	102	59	103	0.96

Coding Sequence: atgagaaaaaaaacgttcagtTTATTTTCCGGATTAGACGGTTGTAATagaggatattttttaaacgacccTTTAGACTTAAAACACGACGGTCCACAGTtgtcgaataaaaagaaaatgtGTCGACCGAAGGGACAACACAGCGCGCCTCGAGGCGGTCCACCTCGCTCGTGGACGAACGCCGAACTAACGGAAGCGCTACAACAAGTCTGGAATAAGAGAATGACCACTTCTCAAGCGTCCAAAATATACGGTATACCATACAACAGTCTGCTAATGTACGTTCGAGGTAAATACGgcaaatcgttaaaattagaaaaactaaaGCAAGAATGCTTCAACGACATCCACTCGTTAGACTTATTAGGCTTTAATTCGAtgagtaataataataacaacaacaacaacaactcgagtaaatcgttaaaaatgcCCGAACCGGATCTAATGCTACCGCCGGGCTTCAATCCGACGCCTTACCCGTCGCCTAATTTCTATCCCGATTTCGGCGCTTCGATTCCCATCCCGATGAGCATGATGCATTTACTGCCACAGTCTGATAAACTACGCGAAACGTTTCAAGATCGCGAAATGTCGTCGCTCTCGATGCACATGGGTTTTAGCAAAAACGACGTCGGCAATCAGAGAAGCAGCTCGGCGCcgatcgattttaataaaaacgaacgCGATCTATGCGACAATAGTCCTTTGGATTTCGCTAAAGATCTATCTTCGCCGTACCAGCACGGCAATATGAAGATGGAAGACGAGACCGCCAACAGTCCGCAATCCGATAAAGAAGACGTACACATGCAAAGGGTACAAATAGAACAGAATGCACAAGACTGA
Protein Sequence: MRKKTFSLFSGLDGCNRGYFLNDPLDLKHDGPQLSNKKKMCRPKGQHSAPRGGPPRSWTNAELTEALQQVWNKRMTTSQASKIYGIPYNSLLMYVRGKYGKSLKLEKLKQECFNDIHSLDLLGFNSMSNNNNNNNNNSSKSLKMPEPDLMLPPGFNPTPYPSPNFYPDFGASIPIPMSMMHLLPQSDKLRETFQDREMSSLSMHMGFSKNDVGNQRSSSAPIDFNKNERDLCDNSPLDFAKDLSSPYQHGNMKMEDETANSPQSDKEDVHMQRVQIEQNAQD

Sequence clustering based on sequence similarity using MMseqs2