Trut034504.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056649.1:37729998-37732969[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0074 0.85 11.8 1.0 2 23 234 256 234 256 0.95 2 13 1.1 1.3e+02 4.9 0.5 3 23 332 355 330 355 0.85 3 13 0.009 1 11.6 0.6 2 20 365 383 364 385 0.93 4 13 0.015 1.7 10.8 0.4 1 20 490 509 490 511 0.93 5 13 0.0011 0.12 14.5 0.8 3 23 563 584 562 584 0.96 6 13 0.0097 1.1 11.4 0.1 2 20 594 612 593 614 0.93 7 13 3.8 4.3e+02 3.3 0.0 2 21 707 726 706 727 0.93 8 13 0.0033 0.37 12.9 0.5 3 23 760 781 759 781 0.96 9 13 0.00052 0.059 15.5 0.8 2 23 791 812 790 812 0.96 10 13 0.066 7.5 8.8 0.2 2 23 819 840 818 840 0.97 11 13 1.3 1.5e+02 4.7 2.0 3 23 848 870 846 870 0.88 12 13 6.4e-05 0.0073 18.3 0.2 1 23 876 898 876 898 0.98 13 13 0.061 7 8.9 0.1 1 20 904 923 904 925 0.94
Sequence Information
- Coding Sequence
- ATGATTGAAACCGTAGCTGGGATAAAGTTAGACGAAAACGACCGCTTTCCTGATCATATATGCGACCAGTGCTTCCGGAAACTCGACAGTACATATTCACTTTGGAAACGCTGTCAATCGCATCATCTGCTAACGAAATGCCCCAGAGAGCGGGAAGACGAATATTTCCGCTGTCGAATCTGCACGCGCAAGGATGTCGATGAGTTGATTTCACTACACAGCATTTGTGACACATGGAAGCTGAAAGTTCACGAGATGATACGGTTTTTAGGTAACGTAGCCGTCGAGGAGGGCACTGGCTTGCCACCGTATGTTTGTGATGTTTGCTTAGATGCACTGGACGAGGGCGTTGGGTTGAAGAGACTATGTCTTGAGTCGGCTGCAGTTTGGCGTAGCGAAACCACGTTCGCTTGGGAGAAGATGGAATTCGAAAGCAACAATCACGAGGGTTTGGTGGTTGATCTATATGccaaactgattgacaataacGAAACCGGAATGCTCGAGTGTTCGGTATGTGAGCTCGGAGTGGTTTCAAATCCGCGTCCGGATAGCTGCAGTGGATGCTTGTTACAGTTTGAAAATAGAAACATACGAAGCTGTGATGATCGAACGCCCCTGAGCGAGACTAAACAATTTTTTGATGTTATCGAAATCAATCCAAGTGGATTGTTTCAAAAGATTCGTTGCAAAGGACCCGTTTGCTGTGGTTGTGATAAGATTTTCTTATCGGAAGATGATTTACGAAAACACAGGAGAGAGGCACATCCTCCGGTTAATATTAGGAATGAGTTTTACTGTGAATTCTGTTCGAGTAATTTAGACTGTGCAGCTCAATTGAAAATTCACCAGAAAAAGGCTAGAAACACCATTTTCATGTACTGCAAGAAATGTCGAAAGATACAAACTCAGCCACACCGTCACCAATTAGAATTTCACATATCAGAGGATGTTTTGAAGAATTTCAGCAAGCAAATCGTCAGTACATATGATTGCTGTGTACCACGATGCAACACTACCTACGATACCCAACAAATGGTACAATCGCATTTATTGGCAGCACACGGTAGAAATGATTCAGCAGATGATAAAACGTGTGGATACTGCAACGCATCTTTTTCGACTGAATCTGCATTCGAAGAGCACAGAAGCCATGGAAGTACACACGAAAAATACTTCTGCGAGAGAGATAACTGCCAATATACTGTTCTTAGCCTGGATAGAATAATTTTGCACAGTGTGCAAGAGCCCCATAAAGTCGTGTCCAAGGATGGAGGGAAGAAAATCAAGCCCAAACATGCCACACCCGATTTGAAACATTTCACTGTAATTGGGGAAGTGGATGACACAATCGATGTATTGGAATGTGAAAGCGAGTTTTGTTGTGGctgttttgagttttttgaaattaatcggaCATTTTTAACACATTGCGAAGAAAAACATGCAAACGTACCAGTAGGTGAGTTTTATTGTGGAACGTGCAAAAGAGAATTCGCACATGAAAAAGCCTTGAATGCCCATGAAGAAAAAGCCGCAGACAGAATTTACTACTATTGTCGGCCTTGCGAAGCGTTTTTGTGGGACATTCTTCAAGTGAATCGCCACAAGGCCTATGTCCACACCGACATTGAGTGGAGCGCTGCGGATGAACGCTATGAAAGGGTTGAAGACTGTACGCCCATATGCTGTGGTTGCGATAAGCAATTTGAAAACGAGGAAGAACTCATAGAACACAGACGAGTTAAACATGCGAAGAATACCAACAAGTTTGGTATCAGGTGCGATCTCTGCCAAAAATTGTTTGGATCTTCGGAGCAGCTGCAAAAACACGTGGATGTTGCAATGAGTGGTGTGGTTTTCAAATGCATGgtAGCGGATTGTATTTTTCGATGTAAGCAACTCTCCGCAATCAAATTCCATGTCACAACAAAGTCACATCGCAGCGCTGATGGTCCCATATATCTCGGCAATCCGAACCCTGGCGAACATCGTTGTTGCTTCATGCGTTGTGATTTCGTTGCTGATTCCTACGATAAGCTCATAAATCATGCGGACATCGAACACACCGTGAGCCGTGAGGAGAGAAATTTACATCCACATCCCTATTATACCGTAAAATGCCCAGTTTGCCTCAAAGGAATGAGAAGTGAAATGTCGCTGATGCTTCATCAGCAAGGCAAAACAACCGTTATATGTAAATGCTGTTTGAAAAGAGTCAAACGGGAGGAGTATACCAGCCACCTTGATGAGTGTAGCACAAAATCTACAGCTATGTGCGAAAAATGCTCCGAAGAGTTACCTTCTCAGGCTCTTTTGAGAAAACATATGAGACAAAAACACCGAGTACAGTCTGCTAAAGATCCTACAGTTTGCAGTATTTGTAGCCGACATTTCAGCAGTCCCACCGTTTTGCGCGAACACATGGCTAGCCACAAAAATCAACGATTATGGAAGTGTGGTTTGTGTCCTCTAAGATTCAACAGTTATACGCCCTTCATAAACCACAGCCGTGTCCATACGAATGAGAAAAAATACGGATGTCGCCATGGATGTGAGAAAAGATTCAAATACCAAGGGGATCGTGATCGACACGAAAAATTGACACATTTGGGAATTAGGCCATTCAGTTGCGGGGTCTGTCCGGCATCATTTGTACGCGATCGCGATCTTCGATTGCATATGAGGAAACATACGGGAATCAAACTGTTTCCTTGTGAAAATTGTGATGCCAGTTTCGACAAATTGAGTGAGATACGACAGCATAAGGAGGAATGTGAAGGAATCAATTAG
- Protein Sequence
- MIETVAGIKLDENDRFPDHICDQCFRKLDSTYSLWKRCQSHHLLTKCPREREDEYFRCRICTRKDVDELISLHSICDTWKLKVHEMIRFLGNVAVEEGTGLPPYVCDVCLDALDEGVGLKRLCLESAAVWRSETTFAWEKMEFESNNHEGLVVDLYAKLIDNNETGMLECSVCELGVVSNPRPDSCSGCLLQFENRNIRSCDDRTPLSETKQFFDVIEINPSGLFQKIRCKGPVCCGCDKIFLSEDDLRKHRREAHPPVNIRNEFYCEFCSSNLDCAAQLKIHQKKARNTIFMYCKKCRKIQTQPHRHQLEFHISEDVLKNFSKQIVSTYDCCVPRCNTTYDTQQMVQSHLLAAHGRNDSADDKTCGYCNASFSTESAFEEHRSHGSTHEKYFCERDNCQYTVLSLDRIILHSVQEPHKVVSKDGGKKIKPKHATPDLKHFTVIGEVDDTIDVLECESEFCCGCFEFFEINRTFLTHCEEKHANVPVGEFYCGTCKREFAHEKALNAHEEKAADRIYYYCRPCEAFLWDILQVNRHKAYVHTDIEWSAADERYERVEDCTPICCGCDKQFENEEELIEHRRVKHAKNTNKFGIRCDLCQKLFGSSEQLQKHVDVAMSGVVFKCMVADCIFRCKQLSAIKFHVTTKSHRSADGPIYLGNPNPGEHRCCFMRCDFVADSYDKLINHADIEHTVSREERNLHPHPYYTVKCPVCLKGMRSEMSLMLHQQGKTTVICKCCLKRVKREEYTSHLDECSTKSTAMCEKCSEELPSQALLRKHMRQKHRVQSAKDPTVCSICSRHFSSPTVLREHMASHKNQRLWKCGLCPLRFNSYTPFINHSRVHTNEKKYGCRHGCEKRFKYQGDRDRHEKLTHLGIRPFSCGVCPASFVRDRDLRLHMRKHTGIKLFPCENCDASFDKLSEIRQHKEECEGIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -