Trut037336.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056649.1:91936812-91955730[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.67 77 5.7 0.2 3 21 14 32 12 33 0.91 2 11 0.56 64 5.9 0.6 3 23 304 326 302 326 0.91 3 11 0.0053 0.6 12.3 0.2 2 21 529 548 528 549 0.95 4 11 0.013 1.5 11.0 1.0 1 23 569 592 569 592 0.96 5 11 0.024 2.8 10.2 1.8 1 23 597 621 597 621 0.93 6 11 0.071 8.1 8.7 0.8 2 23 638 660 637 660 0.97 7 11 0.0075 0.86 11.8 0.0 1 21 665 685 665 686 0.96 8 11 0.099 11 8.3 0.2 2 23 915 936 914 936 0.93 9 11 0.19 22 7.4 3.1 2 23 951 971 950 971 0.93 10 11 5.6e-05 0.0063 18.5 0.4 1 23 977 1000 977 1000 0.94 11 11 1.1 1.2e+02 5.0 0.2 2 12 1022 1032 1022 1033 0.88
Sequence Information
- Coding Sequence
- ATGCTCCACGAGGAGGTCGAACTGGACGATAGCCACCTCTGCAATAGATGTGGCCGCACAGTGGTGGGCCTGGAAACGTACATCAAGCACAGAAAGGTAAGCTGTGTGCAGTCGAAACCACCAACGGCGACGATTACCAGCTCGGGACCCAGTCCCCGGATCGGTTCCGAGCAAGGATACACATCGTTCGATTTCAGCGAGGGAATGAAAGATGCAGATCAACACAAGAAATTACCAAACTACAGCTTCAATTATGAGCTGGAACCCCATCACGTGCAGCGGTCCGACAGTAAAACtgactataaaaatgatgttaACTATGATTACGAGTTGGGGGCGGATCTGTTTTTCTCCTCACTGGAGCTTCAGAGCAGTTCTAAGAAAACGAATCCCAATCATCCCAGTGCCACTAAGATCGCTGCTCCCGTGCGGCATAGGACACGTAAGGTGACAACTTCTTTATCGAATACTGAGCCGGAGCATGAGCAGGATCACGAGGATGATTGGATTGCTCCTCAACATGACTCGGATAAGCTCATGAAAGCCGTCCACGATATAAGCGGAAATAAAAAGGTCGAGCCTCTGTTTACATTTTTCCATCACGAACCCTCGGAACCATCCGAGGAAGAGAGTGAGGAGGACGAGGATTTTGATGCTCCCCCCAGGAATCACACCGGCGGCAAATGGAAACCAGAAAATCGTCCCACATCGTCCCAGTGGCGCTTATGGCCCGATCAGGAAGCCCAACTGCTTGATAAATCCACAGAACACGATGACGAGGAGGAATATAAGGGTTATTCACCCCCTCCAGGACACACCAAGGGTAAGTGGGTGCCTGGCTCGAAAATTGCGCGTCTCGAGTACAAGACCAGTGCACTTCCAAGCAAAGCGTCCGATGATCACTATTGGTGCAGCATTTGCAACCGGAAACTCGCATCCCGATTCGTCTACGAAAGGCATCTGAAATCGAATCTCCATTTGAAGCGAGCCCAAGAGGAAACCGAACTGGAACGGGCCGTCAAACCTACCCTCTATCCCAATGAATTGTCCAAAAGAATGATCAAACGTAGTCCGTGTCCCGAAGAAGCTTTCTTCAACAGTAATCTTAGCCCGAAGAAAACTTCAACTCCGTccccgaaaaaatcgaaaatctccCCGAAAAAATCCAAACGAAAACGCAAATGCTACTACACCAAATGTGACATCTGCAAGACACGTCTACCGATGCACCTTCTCGGAAAGCACCTGATCTCCCGGTACCATTATCGGAGAATGTTGAACTACCCGGAGCAATGTTTCGATGTAATCCTGAAAAACATTCACCGAATTGTGCTACAATCCCCCTTCCAATGTCAACCATGCAAATTCTACGCCAACACCGAGGATCAATTCATGGCCCACTGGAACTCGCTGGATCACGAAAAACGGCTCACTCCAGGGGGAAAATTTTGGTGTAGCTTCTGCAAATTCGAATGCATCGAAAATTATCACATGACAAACCACCTGCTGGGACATGACCATCTGGAAGTGGTCTCCGTTATCAACCGATCGGTGCCGATCATCATACGGAAAATCACGCCAATTCGGTGCGAGTTTTGTGGTGATGAATTTCGCTACAATGCCGAGCTGAACAGACATCAGCGGTTTTGCAACGAAGGAACCCCAGAGGATACCTTGCGGATCAAGCGAACCTTCCAAAACACCTACAGCTGCGATCTGTGTGACGCATCCTTTCACAACAGGATGCTGCTTCTGCAGCATGGCCAGAAGTTACATCGATTGCCGAATTACTACTGCTCGATTTGTGAAGTGTGCTTCAAAACGCCCACCGAATCGATTCAGCATCGGAGAACCACCGCCCACAAGGTCATGTCGGCGAGAAAACGGCACAAAGTGACCGCTAACTGTAAAAAATGTCATATATGTAAGGCAGAACTCGCCGATATTTTGGAGCTGAAGAATCACATTCGGATGAAGCATCCGGAAAATAAATACAGCTGTCCACAGTGCGGAGAAAATTTCGTGTTGGCCCAGGAACTTGGCCGACACGTACGTGACAAAAATTgtacatttttcaatttcaccACATCATCATTGCCACCGCCGTCTTCGTCGTGTTCCGCCATGGCCGACCTCGGAGGCCGGGAGGAAACACCCCCGCCGCCGCCGACGGCAGCATCCCGGTCGCATCCTCTGGGCGAAAATTCAATTATCCTAAATGATTCAATTAAAGTAAATATGAATGATCATAAAGTAGGAAAGGAGTCACATCTGTATTCTTCGACTCCGCCGACATCGGTGGTGGCCGGCAGCGGTGGCGAAGCTACCCGTGTTCAAACAGTTTTAGGAGCGTCGCTAGCAACAGcggaagcagcagcagcaacagctacAACTGATGAGACGGAAGCTGTAGCGCCATCGATGCGAACAATTGTCACGCTGGAGCAATATCCCACGATTCTGCCAACATCGCGAACAAGATCGTCATCTCAAATTGAGACCCACCGGGCGACAGCCACCCATTACCATCATCCGGTGACGGAGGCGGCATGGACCCAGCCAATGATTACCAGCTCTTCGTCCTCGACATCAAATTCCGCTTATAACGATAATATTATCGCCAGTGCGTCCACGTCAGCAGAAATCTTTTTCACCATGGCTAATAATGCGTCCGAAAATAATACTGTTTACGTTGATGAAATTGTTGGCACCATCAGTGAGAACAGCTCAGTCGTATCCTGGCAGTGTAAAATATGCCCATTCAGAACCACCTCCCAGGCTGAATTCTTGTATCATGAAATTCTGCACTCATCAAGTGTGGACTCCCGGACCGACAAGACCGCCAAAATCACCTGTCCGCTGTGtaagaaacaattttcgaaagcATCGCTGCGTTGCCACCTGCGTCAGCATACGGACGAACGGATCTTCCCGTGCCAGCTTTGCTCGTTGAGCTTTACCCGGAAGGCAAATCTTAAGAACCACGTGGAAAACGTTCATAACCCAAAAAAGCCAGCAATTGCGCTGGAAGTCGCGGAAGCTGCAACCAATCCCAAGACTGCTGTTTGTTTGACATGTGGAAAGGCTTTCACTAACAGGTAA
- Protein Sequence
- MLHEEVELDDSHLCNRCGRTVVGLETYIKHRKVSCVQSKPPTATITSSGPSPRIGSEQGYTSFDFSEGMKDADQHKKLPNYSFNYELEPHHVQRSDSKTDYKNDVNYDYELGADLFFSSLELQSSSKKTNPNHPSATKIAAPVRHRTRKVTTSLSNTEPEHEQDHEDDWIAPQHDSDKLMKAVHDISGNKKVEPLFTFFHHEPSEPSEEESEEDEDFDAPPRNHTGGKWKPENRPTSSQWRLWPDQEAQLLDKSTEHDDEEEYKGYSPPPGHTKGKWVPGSKIARLEYKTSALPSKASDDHYWCSICNRKLASRFVYERHLKSNLHLKRAQEETELERAVKPTLYPNELSKRMIKRSPCPEEAFFNSNLSPKKTSTPSPKKSKISPKKSKRKRKCYYTKCDICKTRLPMHLLGKHLISRYHYRRMLNYPEQCFDVILKNIHRIVLQSPFQCQPCKFYANTEDQFMAHWNSLDHEKRLTPGGKFWCSFCKFECIENYHMTNHLLGHDHLEVVSVINRSVPIIIRKITPIRCEFCGDEFRYNAELNRHQRFCNEGTPEDTLRIKRTFQNTYSCDLCDASFHNRMLLLQHGQKLHRLPNYYCSICEVCFKTPTESIQHRRTTAHKVMSARKRHKVTANCKKCHICKAELADILELKNHIRMKHPENKYSCPQCGENFVLAQELGRHVRDKNCTFFNFTTSSLPPPSSSCSAMADLGGREETPPPPPTAASRSHPLGENSIILNDSIKVNMNDHKVGKESHLYSSTPPTSVVAGSGGEATRVQTVLGASLATAEAAAATATTDETEAVAPSMRTIVTLEQYPTILPTSRTRSSSQIETHRATATHYHHPVTEAAWTQPMITSSSSSTSNSAYNDNIIASASTSAEIFFTMANNASENNTVYVDEIVGTISENSSVVSWQCKICPFRTTSQAEFLYHEILHSSSVDSRTDKTAKITCPLCKKQFSKASLRCHLRQHTDERIFPCQLCSLSFTRKANLKNHVENVHNPKKPAIALEVAEAATNPKTAVCLTCGKAFTNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -