Basic Information

Insect: Toxorhynchites rutilus
Gene Symbol: ci
Assembly: GCA_029784135.1
Location: CM056649.1:38675167-38677245[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 5.3 6.1e+02 2.8 2.9 2 23 166 188 166 188 0.92

2 14 0.066 7.5 8.8 2.7 1 20 197 216 197 218 0.94

3 14 0.048 5.5 9.3 2.2 1 21 225 245 225 246 0.95

4 14 0.81 93 5.4 0.5 2 23 322 344 322 344 0.92

5 14 0.015 1.7 10.9 0.6 3 20 357 374 356 376 0.94

6 14 0.0044 0.5 12.5 4.4 1 22 384 405 384 409 0.93

7 14 2.4 2.8e+02 3.9 3.1 3 23 433 455 431 456 0.86

8 14 0.071 8.1 8.7 0.3 1 21 472 492 472 493 0.93

9 14 2.6 3e+02 3.8 0.2 1 23 499 522 499 522 0.90

10 14 0.00068 0.078 15.1 1.3 1 23 529 551 529 551 0.97

11 14 0.23 26 7.2 1.3 1 23 557 580 557 580 0.95

12 14 0.046 5.2 9.3 4.4 1 23 586 608 586 608 0.97

13 14 0.24 27 7.1 1.6 1 23 614 639 614 639 0.89

14 14 5.6e-05 0.0064 18.5 1.0 1 23 645 667 645 667 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	5.3	6.1e+02	2.8	2.9	2	23	166	188	166	188	0.92
2	14	0.066	7.5	8.8	2.7	1	20	197	216	197	218	0.94
3	14	0.048	5.5	9.3	2.2	1	21	225	245	225	246	0.95
4	14	0.81	93	5.4	0.5	2	23	322	344	322	344	0.92
5	14	0.015	1.7	10.9	0.6	3	20	357	374	356	376	0.94
6	14	0.0044	0.5	12.5	4.4	1	22	384	405	384	409	0.93
7	14	2.4	2.8e+02	3.9	3.1	3	23	433	455	431	456	0.86
8	14	0.071	8.1	8.7	0.3	1	21	472	492	472	493	0.93
9	14	2.6	3e+02	3.8	0.2	1	23	499	522	499	522	0.90
10	14	0.00068	0.078	15.1	1.3	1	23	529	551	529	551	0.97
11	14	0.23	26	7.2	1.3	1	23	557	580	557	580	0.95
12	14	0.046	5.2	9.3	4.4	1	23	586	608	586	608	0.97
13	14	0.24	27	7.1	1.6	1	23	614	639	614	639	0.89
14	14	5.6e-05	0.0064	18.5	1.0	1	23	645	667	645	667	0.99

Sequence Information

Coding Sequence: ATGGGCGAAAGAATGGGAACCCGGAATGGCGCCGGCTGTCGCTTCTGTGGAGATAGCGACGAATTAATCGCTTTGAACGAGGTGGTGGACTTCACCGAGGGTGCTAGTATCGCTGCGACTATCAATGATTTAGCGGGAGTAAATATAAAACCAGAAGATGGCCGATCTCAGTGCATATGTTTTCAACGATGTTTGGCTCGTTTGCGCGATTGCTACCATTTCAGACAACAAATACAAAAGGCAGAAGAAACGGTGCAAAGTGTACAAATAAAGGATGAAATCGTGGTAACTAACGATGATAATGTCTCCGAAGAAGAATATGTTATGGAATACCTAATGGAGGATGATGATAATTGTGGGAAAGGAATGAACGAAATCGAACCATACAAAGCAGACGACATTGGATTGACTGCTGAATTTGTTTTGCCACCTGAAGAGTTTATCGTTAATCAATTGGAATATGAAAACTTCAATTATCTAGAGTTCAGTGGTGAACGCTGCTGTGGATGTAAACGTTTTGTGAAGGATGTAAATCAACTGTTAAGCCACTCCAAAGAGACTCACATTTCCTTCGAAGATTGTGCAGAATTTTGTTGTAATGTTTGCAAAACCAACTTCGAAAGTGAAACACAACTTCGAGAACACAAGACCTATTTCAGCATAAAAGAACTGTATATATGTAAACTTTGTCAGCAATGTTTTCATGGGAGACAATCGCTTATGTTACATATGGAGAACAACGAAGATCATTCTAATCGAACGAAGGAGCTTGCTATGGACGATGGCGTGTTAGTTGAGCCTCCAGCTGTAGGCCAAGATATCGAAATTGAATTCAGCTTACCAGAAGATGTAGAGAATAAAGCCCAGAATCAGCGTCAATCAACAAAATTTCCAGATCAGAAGTTGATCAGCCATATAGAAGAGTACGACCAGTATCAAGTTATTCACGTAGAAAACGCAGAACGCTGTTGTGGGTGCGGAGTgtatttcgaaacattcgaagagaTGGTGCAACATGCCCAACAGGAACATCAACATCGGAAAACTCCAGCTCCGAATAAACCATTCTGTGAAATTTGTCACGAAAGTTTCAAGGCTGCGTATGCTTTGAATGCTCATAAAACTCATTGTCGATTCGTGAGGCAACTCTACCACTGTAAACTTTGCAAAATCATTTACTCACGAAAATTTCACCTGAAGCGGCATTTCCAAACTGCACCCAATCATGTGATAGATAGCGATAGTCTCGGACTCGTCAAGCCTAGCAATCGTAACGCATCGAATGCTGGGTTTGCGTGCTGTTTTCTGAAATGTTCACATGTTTTCGGAAGTGAACAGCAGCTCCTCGCCCACGTTGACGAACATCATGGACCGCGTAGGAAAATAAATTCAGCAGAAAGAATTAGTGAGGAACATGTTTGCGTGATTTGTTTGCGGTCTTTTGGTTCTCAGCAATTACTGTTGCTCCACCGGAACCGTACACTGAAGAAGAAACACATATGTAGTTATTGCGCGGAAGCTTTCCTTATTCCTAGTAAACTCCGAGAGCACGAGCAGCTCGTTCACTCTGGAAATGTTCCCCAGCACCCGTGTGACGTTTGTGTGAAAGTGTTCCGAACAGTGAATCTTTTGAAAATGCATAAGCAAACGCACAACCAGAAGCGTGAATTTTCCTGCGATCAATGCACAGCTCAGTTTCTGTTTCGtttccagttgaaaaaacatgttcGCGGTGTTCACCCCACAAACTTTCCTTACGAGTGTAGCTTTTGCGAGAAAAAGTTTTCCACCAAAGCAAAGTGTGATCTCCATTTGCGATCCCACACCGGCGAGAAACCCTACAGTTGCCGGTATGAATCTTGTGGGAAGCAGTTTTCACACGTCACCGATCGAAAACGACATGAGATGGGCGTTCATACGGGTGAACGGCCATATCGCTGCGAACATTGCCCTGCAGCGTACATCCGGAAACGAGAACTGCTCATGCACATGCAAAAACATCAGACATTGAAGGGTTAA
Protein Sequence: MGERMGTRNGAGCRFCGDSDELIALNEVVDFTEGASIAATINDLAGVNIKPEDGRSQCICFQRCLARLRDCYHFRQQIQKAEETVQSVQIKDEIVVTNDDNVSEEEYVMEYLMEDDDNCGKGMNEIEPYKADDIGLTAEFVLPPEEFIVNQLEYENFNYLEFSGERCCGCKRFVKDVNQLLSHSKETHISFEDCAEFCCNVCKTNFESETQLREHKTYFSIKELYICKLCQQCFHGRQSLMLHMENNEDHSNRTKELAMDDGVLVEPPAVGQDIEIEFSLPEDVENKAQNQRQSTKFPDQKLISHIEEYDQYQVIHVENAERCCGCGVYFETFEEMVQHAQQEHQHRKTPAPNKPFCEICHESFKAAYALNAHKTHCRFVRQLYHCKLCKIIYSRKFHLKRHFQTAPNHVIDSDSLGLVKPSNRNASNAGFACCFLKCSHVFGSEQQLLAHVDEHHGPRRKINSAERISEEHVCVICLRSFGSQQLLLLHRNRTLKKKHICSYCAEAFLIPSKLREHEQLVHSGNVPQHPCDVCVKVFRTVNLLKMHKQTHNQKREFSCDQCTAQFLFRFQLKKHVRGVHPTNFPYECSFCEKKFSTKAKCDLHLRSHTGEKPYSCRYESCGKQFSHVTDRKRHEMGVHTGERPYRCEHCPAAYIRKRELLMHMQKHQTLKG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -