Trut051024.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056649.1:321504361-321517191[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0029 0.33 13.1 0.8 2 23 198 219 197 219 0.97 2 13 0.0027 0.31 13.2 0.3 3 23 258 279 257 279 0.97 3 13 0.27 30 6.9 1.8 2 23 289 310 289 310 0.88 4 13 0.098 11 8.3 0.3 1 20 318 337 318 339 0.94 5 13 0.35 40 6.5 0.1 2 23 466 487 465 487 0.97 6 13 1.1 1.3e+02 4.9 0.2 1 23 493 520 493 520 0.92 7 13 0.015 1.7 10.9 2.5 1 23 524 547 524 547 0.98 8 13 3.4e-05 0.0039 19.2 0.8 1 23 554 576 554 576 0.97 9 13 0.00035 0.04 16.0 4.5 1 23 584 606 584 606 0.98 10 13 0.055 6.3 9.1 0.3 2 23 698 719 697 719 0.98 11 13 3.7 4.3e+02 3.3 2.9 1 23 756 779 756 779 0.82 12 13 0.56 64 5.9 2.6 1 16 786 801 786 810 0.81 13 13 0.00026 0.029 16.4 0.9 1 20 818 837 818 839 0.94
Sequence Information
- Coding Sequence
- ATGGCCACTATCTGTCGTCTCTGCCTGCGATCATCACCGGCCATGGTTCCACTATTTGAGGCACTTTTAGGTGAAAAACTAGTAATCGAAATCATCCAAAGCATCATTGGAATGGAGCTCGATCCTTGCTTAAATTTGCCACGTCAAGTATGCCAAGAATGCCTCAAGAAAGTGAATTTGTTGTATGACTTCCAGCTGGATTTGATCAAGTGTCAATCCTTGCTTTCTAAGGGGAAAATCAAAGACGTTCTAATATCTGATGCCGCTGGACAAACAGCTGTCATCAAATCCGAAGAAACCGATTATAAGGGGTTGAAACACGGCGAAAGAATCGGAACTAGTAATAAGAATTCGAGTGTTCCTGCATGGTTCGTTCAAATAAACCAAGACAAAACGACAGGAATCATTCAGGAACAAATAACGCAGGAGCCCATCAGTATCAAACATGAGCCACCGAATTCCGATGACGATGAAATGGATGATGATGAAACTCAGACTCATAGTTATACCAACGACAACAATCACTCTGATCACTCTGAGGGGAAACCGCAACGAAGGAATCCTCCAAAAAGAGTTAAAACCATTCCAAATAAATGCTACATCTGTGACACTATTCTCAGGAACAAAAGCGATTTCAAAGATCACCTCGAAAGCCACAGAGATATGTTACCCTTCAAATGCTTGCAGTGTAGCACAGAAGAAAATCCAATCGAAGCACCAACCGTTTTAACACTTAACAAACATTTCGAAACGCACACTTTCCAGCTGCTTTGCCCACGCTGTCCGTTACGCTTCAGGACGAGCAGTTCGTTTGTGTATCACGAAAGGATCATCCACGAGAAGGACAAGGAGAAATTTGAGGAACGCTGCGAGTTCTGTGGGAGAGTCTTTAACAATTATCAAATGCATCGGAATCACGTGCAGGCACACAAGAATGTCATCCTGCAGCGGTACAAATGCGAATCCTGCGAGACCGTCTTCCCGTCGAGACGTATTTTGACGAGGCACACGTCGTCCCGTTCATGTATGCGTAACATAGAAAAGAAAGCACGACAAAACGTGGAATCAGGCAAACGCAAACGATCGCTCGGAAAACGGGAGCGCAAGCGCATGGCAGTTTTGAAGGAAGTTGAAAGAATAGTTATCGCAAACTCGAAACGAGAAGATCATAATATTTCGCAACAAAAGGACAGGACGGACGAGAGTAAAATATCAAGTCCCATCATAAAGACAGAGCCAAATGATATAGATGAGGATACCACGACTCAAGATAATGGGGTACACAGCGTGatcaataatagattattcAAATTCAGCACAGAtgacatcgagaagattcctAGCTTCCAAAGGCCACCGAAGAAGCCTGCGTTAATAGTGAAGTTCATTCCGAACAAATGCTACATCTGTGAAGTTATTCTAGGAAATAAAAACGACCTCAATGATCATCTTGAGATTCACATGGAGTTGCTACCTTACAGATGTACGCAGTGCAGCACTGAAGCCAACCCTATTATCTTTACCACGATAGTTCTACTCAACAGACATTTCGAGACCCACAGTTTCAACTACGTTTGTCCTCACTGCCCGTTACGACATCGGAACAATAGATTGCTAGCGTATCACATACGGACCACTCATGTTGAGCAGAAGTCTGAGTTTCATTGTGAAATCTGCGGGAAAGTGTTCACGAGTGATATTGGTTTTCAAAATCATATCAGACTTCACAAGAACATGATGACGCAACGATACAAATGTGAAACATGTCACAAGCATTTTCCGGCACGGTATAGTCTACAGAGGCATCTGGCATCGCATGCGACTCTATGTAGAAAACCAGAAGAGCAACAACCGGAATTGACTAACCTTGAAACTACCAATCCAACCACTGAAGTAGTGGAACGAAACTCAAGTGAACCAGCTAATGATTTTCTAGACCAATATGAATATGATGAACAAGAGAACGATATGGATGAAACTATCGATCACGACGTTAGCGCAAATCAATCCAATGGTGAGGAAAGCTATGACAATGAGGAAGACGATTCTAGGAGCTCGGATGGAACGAAAGGGGGAGAAACTATTCCAAATAAATGCTATATTTGTGGGCCTATTCTCGAAAGCGAATTCGAATTCAATAAACACCTCAAGACCCACAAGAACATGTTACCCCATAAGTGTTTGCAGTGTAGTACAGAGTCGAATCCCATCGTAATTTCCACCGTGATGACCCTCAACAAACATTTCCAGAGACACGACTTCAAACACGTTTGTCCACACTGCCCGTTGCGGTATAAGAGTGTTCGTTCGATAAAGTGCCACATACAGGGCGTTCATGGAGACCAGAAGCTCGATTACATCTGTGAAACGTGCGGAGAGAGGTTTAGCAAAAGCAGATACTTCCTGTATCGGCAACACGTTAACCGTCACAAGAATCTACTCACGGAACGATACACGTGCAAACCTTGCAAGAGAATTTTTTCGACGCAACGAAATCTGAAAAGGCATCAGGCATCTTATATGTGTATTCGTGAGAGCGCAAAGGAACCACAACGGGAAATGACTACCCATCAGTTGATTGATGCTGGCGCTGAAGCAGTAAAACAAGAAGTCACGAAATATTCAAGGGAAGAAGAAGCAAATCATACTCTGGAGCAGGCTAGAAACGATCGACCGAGTTCAATCACAAAAACAGACCCATGTGATGTGGAGAAAACTGACGATGAAGAAGATACCGACAAGGGAACGAGCACAGCGTTTAGCAATAAGACCAAGGATGGAGAGACAATATTTGAGTCCAAGGAACGAATAATTTCACAGAAAAATGATAACATTTCGATGCTTGGTGAAATTAGCAGAAGTGATAACCAAAGCTCAATCATAAAATTAGACGCAAATGGCTCCCAAATGATAAATGTTCGAAATAGTACGAATCTGCTAGAACTGGAACGTATAGACATAAAAAATGAACCGCTCGATTCTGACGATGATGATTAG
- Protein Sequence
- MATICRLCLRSSPAMVPLFEALLGEKLVIEIIQSIIGMELDPCLNLPRQVCQECLKKVNLLYDFQLDLIKCQSLLSKGKIKDVLISDAAGQTAVIKSEETDYKGLKHGERIGTSNKNSSVPAWFVQINQDKTTGIIQEQITQEPISIKHEPPNSDDDEMDDDETQTHSYTNDNNHSDHSEGKPQRRNPPKRVKTIPNKCYICDTILRNKSDFKDHLESHRDMLPFKCLQCSTEENPIEAPTVLTLNKHFETHTFQLLCPRCPLRFRTSSSFVYHERIIHEKDKEKFEERCEFCGRVFNNYQMHRNHVQAHKNVILQRYKCESCETVFPSRRILTRHTSSRSCMRNIEKKARQNVESGKRKRSLGKRERKRMAVLKEVERIVIANSKREDHNISQQKDRTDESKISSPIIKTEPNDIDEDTTTQDNGVHSVINNRLFKFSTDDIEKIPSFQRPPKKPALIVKFIPNKCYICEVILGNKNDLNDHLEIHMELLPYRCTQCSTEANPIIFTTIVLLNRHFETHSFNYVCPHCPLRHRNNRLLAYHIRTTHVEQKSEFHCEICGKVFTSDIGFQNHIRLHKNMMTQRYKCETCHKHFPARYSLQRHLASHATLCRKPEEQQPELTNLETTNPTTEVVERNSSEPANDFLDQYEYDEQENDMDETIDHDVSANQSNGEESYDNEEDDSRSSDGTKGGETIPNKCYICGPILESEFEFNKHLKTHKNMLPHKCLQCSTESNPIVISTVMTLNKHFQRHDFKHVCPHCPLRYKSVRSIKCHIQGVHGDQKLDYICETCGERFSKSRYFLYRQHVNRHKNLLTERYTCKPCKRIFSTQRNLKRHQASYMCIRESAKEPQREMTTHQLIDAGAEAVKQEVTKYSREEEANHTLEQARNDRPSSITKTDPCDVEKTDDEEDTDKGTSTAFSNKTKDGETIFESKERIISQKNDNISMLGEISRSDNQSSIIKLDANGSQMINVRNSTNLLELERIDIKNEPLDSDDDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -