Trut034600.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056649.1:38744791-38751969[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0015 0.17 14.0 1.7 2 23 200 222 200 222 0.95 2 19 2.4 2.7e+02 3.9 0.2 1 23 263 286 263 286 0.93 3 19 5 5.7e+02 2.9 1.9 3 22 338 357 336 359 0.86 4 19 0.0025 0.29 13.3 0.7 1 23 372 395 372 395 0.96 5 19 0.0014 0.16 14.1 2.8 2 23 400 422 399 422 0.95 6 19 3.5 4e+02 3.4 0.2 1 10 590 599 590 610 0.89 7 19 0.35 39 6.6 0.5 1 21 618 638 618 639 0.96 8 19 0.02 2.2 10.5 3.5 2 23 667 688 666 689 0.93 9 19 0.0029 0.33 13.1 2.7 1 21 702 722 702 723 0.94 10 19 9.7 1.1e+03 2.0 0.5 1 21 730 750 730 754 0.86 11 19 2.8 3.2e+02 3.7 1.9 1 23 778 802 778 802 0.89 12 19 2.6 2.9e+02 3.8 1.1 2 20 823 841 822 843 0.91 13 19 1.3 1.4e+02 4.8 0.1 1 23 850 872 850 872 0.90 14 19 0.057 6.4 9.0 4.4 3 21 880 898 878 900 0.94 15 19 1.7e-06 0.0002 23.3 1.7 1 23 905 928 905 928 0.97 16 19 0.23 26 7.1 2.6 1 23 933 955 933 955 0.97 17 19 2.6 3e+02 3.8 0.4 1 23 961 986 961 986 0.89 18 19 0.00025 0.029 16.4 3.2 1 23 992 1014 992 1014 0.97 19 19 0.0011 0.12 14.5 0.2 1 20 1020 1039 1020 1040 0.95
Sequence Information
- Coding Sequence
- ATGCACCAAGCATTTGTTTCGACGCAACACTTACGGAGGCCGAAAGTGTGCCGCATTTGTCGGGCTCCGGATGATGACGATCTTATTTCAGTGCTGTTGGTGCAAGAGTGTGTAACCATTGCGCAAATGATTCAAGAGCTAACCGGGGTCAAAGTGATGGCTGACAAATGTCTCCCACAGAACATTTGTCTGGCCTGTTTGGAGAGGTTGCGGAGTGCTTTCCAACTACGACAGCAATGTATCGATTCTGATCAGATATTCCAGAGAGAGCTTTATTCGCAGTGTATGAAGGAGGAATCCCAAGCtgtggtgaaattggaaatTGAAACATTGAGCTCCGAAGAGCAGGATGCCGATTTACGTGATGATGAAGAGGATAGTGGGACTTCGAGCGCTGAGTCAAATAATGTAGGAAAGCATAATTCAGATAAACTAGAAGAGCAAGATGATGACACTCGTACGATATCAGCGAAGGAATTAATTGCAATTTTGGCACCGGAGGAGAAGGATTCAGTACAACTTAGGCAGTACGAAGAAACAGATTGTGAAATTGTGTACCAGAGTAAGCACTATGAGCGGATAAAATTCGTCGTGGCGCAATGCTGTGGTTGTCCGCAGAGCTTCAGGGACAAAAAAGAATTACTGGCTCACTCCCAAATGAGTCATAGACCTTATGGTCAAGGACATAACAGTCAAAATGATCTTCATCAATGTTCTGTATGTTATGGGCGTTTCAGAGACATTGAATTAAATGCTTCACATCGAGACCATATCGATTTTGAGCGTTATCGGTGCAGAGTGTGCGATCAGCTGTTGGGCAGCAAGGGCCAGATAGTGAATCATCTACAGGGAAAGCATTCGATTGAGCTCGAAAATGATGTTGACGGTGACTTCGATGTGGTAGATTCTGGTGAGCAAGGGACGATTAATTTGACTGATTTCCACAGCAGTCAGTATAAATTAACCAATGTTAATCAGGACTACGAGTTAGTAGAATTTACCGGAATCTGCTGCTGTGGGTGTTTGGAAATCTTCAACACCCGCGAGGAGTTTGAACTGCATTCGAGTGAGGTGCATTTGCCACAAAGGATCACCGAGGACGATATCAATCCGTTCGAGTGCAGCGTATGCTTTCAACGATTCACCAAGAAGGGATCGCTTGCGCTCCATAAGATTAGACCACATAGGCGACGCATAGTATGTCGTTTGTGCAGAAAAATTTTTAAGAATGAAAGCACTTATCAGAAACACATGATAAGCTGTCATAGTGTTGTTGTGGATGCGAGGAGAAATCTTAAACCAGATATGGAActaatggagattgaaactgaGGTTGATCAGATGCAGCACTCGGAACAGGAAGGAAGTATATATGGTTCAGAAAGGAATAAATCCGAAAACTACGGGATGCAAGAAGTAGAATACATAGAAGATCTTCCGGAAGAAATAGAACGAGTTGTACAAGATGATAGTGACGAAGACTCAGAATTTGAGGAAGACGACATGAACGAATTCGGAAGTGTCCAGACAAAGGAGAAGAACAGCAACAAATATCTACCTACTAGGCAACGCAAGGAGATGGGTCGTGTTCCAGGTAATGTGCTTCGCGTTATAGAACAGTTGGACGGGTACAACATTGTGGAGATACTGAAGGAACGATGTTGTCGCTGTTTGAAGTTTTTCGACTCCATTGAAAAGCTTGATGAACATACGAAGCTGCACCAGGAAGAATCACTAGCCTTCGAAAGCTCGGACAAACCGATCAAGTACCAGTGCGATTACTGTCTGAAGCAGTTCGACATTGCGTTAGTTTACGTAGTGCATAAACGTATTCGGGAACAGAAACAGTTCTATCAATGCAGGTTGTGTGATTTTATTATCGATTCAGAATCAAGGCTTAAAAATCACATGCTCCACAATGACCAGCATGCGAAGTTTTTCAATCTAATTCGAGAGGATGTCAGCGATCGATATGATGTTGTGAAAGTACACGGAACTCGTTGCTGTGGTTGTGGCCGCTATTTTGACAGTGAGGAATCGTTGATCCGTCATTCCCAACAACATCATCCGAGAGATCCGAAAAAAGATTCACTTAAGCGTACGCATGTGTGCAAGATTTGCGATAAACGATGCTACAACAAATCGGAGGTAGAAGCGCACAGGAAAAAGAACGGCTCAACGGTGCGTTACTATTGTAAACTATGTCAATTCGGAACGCCTAACGAAGCGAGAATGCTTAAACATTTGTACAGCTCGATCCATAACCAAGCGTTGCCATCGATCGAAGTTAAAAACATTGAAGTGGGTTTTCGGAAGGCAGGAACTCTGCGGTATTGTTGCTTCGAAGGGTGTAACCTGCCGTTCCATGATTCCCAAAAAATGCAGGAACACATTGACGGATCACATCGGCAGGAGAGGGAGGAGAATATTGCCACTGTCGGTGGTGAGTATAGCGGAAATCGACTGCAGTGCGACTGCTGTTTTCTTGTTTTCCGAACGGTTGCACTGCTCAAACAACATCAGTTCAGCAATCGTGAGCCAAAGAGTTATGTGTGCTCTGTTTGTGGAGAGGCCAAACTTAACAAAACTGCACTCACAGCGCATGAGATGAGGCACACCGGTGAAAGACCATACGGTTGTTGTGTATGCGGAAAGAGCTTTTCTTCACAAACAATACTCAACTCGCACATGAAGTGTCATGTGCCGAAACAGTATCAGTGCAACGAGTGCGGGGAAAAGTTTGCCCGTGGCGAAAATCTCAAGCGTCACATCCGCCACCGACATTCGGAAGCCACGTTCTGTTGTACCTATTGTCCCCGCAAATTGAAGACTCGCGAGGCCCAAGTTCTGCATGAACGATCTCACACAGGTGAGAAGCCGTTCTCGTGCCGAACAGAAGGATGCGAGAAGAGGTACGCAAGCATTACCGATCGAAGACGACATGAGATGGCCACCCACACGGGAGAACGTCCACACAGTTGCTCGTATTGTTCGGCGTCATTCGTGCGCAAGCGACAGTTGACAATCCATGAGCGGAAACATACCGGTGAAAGACCATTCGTTTGTGGCAGTTGCGGGAAAGCCTTCGTTGATGCACCTCTATTGAGGAGACACACCTGTTAA
- Protein Sequence
- MHQAFVSTQHLRRPKVCRICRAPDDDDLISVLLVQECVTIAQMIQELTGVKVMADKCLPQNICLACLERLRSAFQLRQQCIDSDQIFQRELYSQCMKEESQAVVKLEIETLSSEEQDADLRDDEEDSGTSSAESNNVGKHNSDKLEEQDDDTRTISAKELIAILAPEEKDSVQLRQYEETDCEIVYQSKHYERIKFVVAQCCGCPQSFRDKKELLAHSQMSHRPYGQGHNSQNDLHQCSVCYGRFRDIELNASHRDHIDFERYRCRVCDQLLGSKGQIVNHLQGKHSIELENDVDGDFDVVDSGEQGTINLTDFHSSQYKLTNVNQDYELVEFTGICCCGCLEIFNTREEFELHSSEVHLPQRITEDDINPFECSVCFQRFTKKGSLALHKIRPHRRRIVCRLCRKIFKNESTYQKHMISCHSVVVDARRNLKPDMELMEIETEVDQMQHSEQEGSIYGSERNKSENYGMQEVEYIEDLPEEIERVVQDDSDEDSEFEEDDMNEFGSVQTKEKNSNKYLPTRQRKEMGRVPGNVLRVIEQLDGYNIVEILKERCCRCLKFFDSIEKLDEHTKLHQEESLAFESSDKPIKYQCDYCLKQFDIALVYVVHKRIREQKQFYQCRLCDFIIDSESRLKNHMLHNDQHAKFFNLIREDVSDRYDVVKVHGTRCCGCGRYFDSEESLIRHSQQHHPRDPKKDSLKRTHVCKICDKRCYNKSEVEAHRKKNGSTVRYYCKLCQFGTPNEARMLKHLYSSIHNQALPSIEVKNIEVGFRKAGTLRYCCFEGCNLPFHDSQKMQEHIDGSHRQEREENIATVGGEYSGNRLQCDCCFLVFRTVALLKQHQFSNREPKSYVCSVCGEAKLNKTALTAHEMRHTGERPYGCCVCGKSFSSQTILNSHMKCHVPKQYQCNECGEKFARGENLKRHIRHRHSEATFCCTYCPRKLKTREAQVLHERSHTGEKPFSCRTEGCEKRYASITDRRRHEMATHTGERPHSCSYCSASFVRKRQLTIHERKHTGERPFVCGSCGKAFVDAPLLRRHTC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -