Trut009732.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056647.1:159209787-159211399[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.4 7.4e+02 2.6 5.0 1 19 200 218 200 223 0.93 2 10 6.9 7.9e+02 2.5 0.1 6 20 232 246 232 248 0.93 3 10 0.00026 0.029 16.4 3.1 1 23 255 278 255 278 0.96 4 10 1.5e-05 0.0017 20.3 1.7 1 23 286 308 286 308 0.96 5 10 0.00032 0.036 16.1 3.2 2 23 317 339 317 339 0.96 6 10 0.00074 0.084 15.0 2.6 1 23 345 367 345 367 0.98 7 10 0.32 36 6.7 3.5 2 23 377 398 376 398 0.97 8 10 0.32 37 6.7 0.2 2 23 405 427 404 427 0.93 9 10 2.8e-05 0.0032 19.5 0.1 1 23 433 456 433 456 0.91 10 10 0.00076 0.087 14.9 6.3 2 23 463 485 462 485 0.95
Sequence Information
- Coding Sequence
- atgGACCACAAATCGGGCGAAAACTGTTTAATGTGCGCGAGAAAGTCGCTCAATTTTCACCGTATTCTAGACGAGAACAACGATACAGATAAAAGCAGCCACATTAGCGGTGTACTTTTCCAGCATTTCTGGTTCCGGGATGATGACCTACGGGATAATGTCATCTGCAAGATTTGTTGGGAGAAGATCAGTGAATTTCACGAGTTCTACCTGGATGTGGAGAAATTGCACCAGCGGAGGGAACCCATACCGGTGCCAGTGATTGTCAAGGAAGAAGAGCAAGAGTTCATTTTAGAATTCGTCAAGACAGAAAGTTTTACAGAGATAAAGCGAGAATCGAGTCCGGAAGAGCAGGTTGTAACTTCCGCCGATCAGCAAGATTCCGAGCAAGAAGAGTTCTCCAACGAGGAGGTAACCCATTCGGAGTACGAACCGAAAGTTGTCGAAGAGAAGCCCCGTGCGACGCGAGAGTATACTAAAAGGACAGTAACTGGGCGGCAGAAAAAAAGCAAGAATGACAAAGCTTCTTATCCATATCCATCAAAAACGCCACAAGAGCGCGAAGCAGAAGATATATTCATCAAACAGCACACGCGATATGTTTGCGAGAACTGCAATGTTGAGTTTGAACATTTTCACGTATTTCAGAGGCACTGCTCACAGATACACAAAAAGGAGGGTTTCATAACGTGTTGCGGTGTTCGATACCGGATGCGGTCCATGCTTTATCAACATGTTCAGTTTGTCATGAATCCGGATGCGTTCAAGTGTGAGATTTGTGAAAAAACTTATAAGAATCGGTTCGGCTACAACCGCCATAAAAAAGAGAGTCATGCTACAGAGTTGGAACGTGCCTTTCAATGCCACCGCTGTCCCAAGTCCTTCGTCAGGGAACGTGCCTTGGAGAAACACCTCTCCGATCACGAAACGTTAGATAACGGGACGGCAAAGTGTGAAACGTGCGGCAAATGTTTTAGCAACATTAACGTCCTGAAGAATCATATCAAGTATCGTCACATCAAACAGATGCAATACATTTGCGATGTATGTTCGAAGCAATTCTATATGCGATCAATGTTTATGACTCATCGCAAGACGCACGAAGTGCCCGCGGAAGAGCTGCGCAAGCAATGTCCGGTTTGTTCAAAATGGTGCAAAAATCATGACTACTGGCGCATCCACGTGCGTCAACACAAGAACGAAGGGGAGCTAAGCTGCGAGGCGTGCGGTCACATCTCTCCCAATCTAGTGGCTTTGAGGCGTCACAAGGCACGGATGCACTTGGGACCACGTGTTTTTCCCTGTACGCTCTGTGGGAAGGAATATTCGCGTGCAAGCACCCTCAAGGAACATGTCGCTGCGGTCCACACGAGAGACGGACTCTGTTACTGTCCACACTGTGAGAAACCGTTCAGCTCGAGTGCAAATATGCACACCCACCGGAAAAAGATACACCCGAAGGAATGGCTCGAGCAGCGGTTGGCCAGATACGCCAACAAGGACGCTGTGCCGGATACTACAGCTCGGTCGCAGAATGAGGCGATGTTTGCGGAATAA
- Protein Sequence
- MDHKSGENCLMCARKSLNFHRILDENNDTDKSSHISGVLFQHFWFRDDDLRDNVICKICWEKISEFHEFYLDVEKLHQRREPIPVPVIVKEEEQEFILEFVKTESFTEIKRESSPEEQVVTSADQQDSEQEEFSNEEVTHSEYEPKVVEEKPRATREYTKRTVTGRQKKSKNDKASYPYPSKTPQEREAEDIFIKQHTRYVCENCNVEFEHFHVFQRHCSQIHKKEGFITCCGVRYRMRSMLYQHVQFVMNPDAFKCEICEKTYKNRFGYNRHKKESHATELERAFQCHRCPKSFVRERALEKHLSDHETLDNGTAKCETCGKCFSNINVLKNHIKYRHIKQMQYICDVCSKQFYMRSMFMTHRKTHEVPAEELRKQCPVCSKWCKNHDYWRIHVRQHKNEGELSCEACGHISPNLVALRRHKARMHLGPRVFPCTLCGKEYSRASTLKEHVAAVHTRDGLCYCPHCEKPFSSSANMHTHRKKIHPKEWLEQRLARYANKDAVPDTTARSQNEAMFAE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01471903;
- 90% Identity
- -
- 80% Identity
- -