Trut040473.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- RTase
- Assembly
- GCA_029784135.1
- Location
- CM056649.1:154213112-154220719[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.095 11 8.3 2.2 3 23 1268 1290 1266 1290 0.89 2 11 2.5 2.9e+02 3.8 2.2 1 21 1303 1323 1303 1324 0.92 3 11 2.6 2.9e+02 3.8 1.4 1 23 1329 1352 1329 1352 0.90 4 11 2.6 3e+02 3.8 0.5 3 19 1372 1388 1371 1393 0.91 5 11 0.0006 0.068 15.3 0.3 2 20 1407 1425 1406 1427 0.95 6 11 0.0073 0.83 11.8 3.9 1 23 1434 1456 1434 1456 0.96 7 11 0.0006 0.068 15.3 0.1 1 23 1462 1484 1462 1484 0.97 8 11 0.00021 0.024 16.7 5.2 1 23 1489 1511 1489 1511 0.97 9 11 1.4e-06 0.00016 23.5 1.0 1 23 1518 1540 1518 1540 0.98 10 11 0.029 3.3 10.0 2.2 1 23 1546 1568 1546 1568 0.98 11 11 8.2e-05 0.0094 18.0 0.1 3 21 1576 1594 1574 1595 0.95
Sequence Information
- Coding Sequence
- ATGGGCAGCCCTTATCCTCTCGACACAGTCGAGCCACATCATATCAGTTCCTGCTGCAGTCGTCCCGACTCTGTACTCGATGGTGGAGATAGGGCAGCCCAGCCTCCTCTGTCAGGCAAGTATTCTTCCGATAAAGAATCGTTGCTCTTTCATCAAAGTTCAGGTTTCAGCAATTCTTCACAAAACGTCTGCTATCAACAAGCTTCACTGCACATTGAGACCACCGGAGGTGTTAAGCAGTTACCGGGACGCACGTCAATAAGCACGATGGAAGCCTCTTCTATGCGCAGCACAGTCTTGACCGATCAATCAAGCAGTTCATCTCTGCAATCAAATCGACTCAGTTCCAGTCTAcgcagtcgtcccggtcctgtgtcTGCTGCTACGGAAGAGGTCTTCCAGCCTGCTTTTCAAGGCAAGAACATATCCACTTCGAACAATACGCTTCCTGATTCATCCGTCGTTCACAGATTTCCAACAGTATCTGACCAGAATACACGAAACGCGCAACATAATGACGATTTCTACAACAGGAGAGTCATAACGGTTTTCTATCAGAATGTGAGAGGACTTCGTACCAAAATTGATGACCTGTTTCTGGCTGCATCGAATACGGAGTATGATGTtattgttctcaccgaaacatGGTTGAATTATGATATCCACTCCGCCCAACTATTTGGTGACTACTATACGGTGTTTCGAAACGATCGTGACTCAATTATGACAGGGAAAAAAAGAGGAGGCGGCGTACTCATTGCGGTATCGAGGAAGTTTAGCTCCTCAAAAACAGTGGCGCAAGTTAGCGATTTAGTGGAGCATCTTTGGGTGAATATACATGGACCAGACAGTATTATTATTGTTGGAGCGGTATATTTGGCGCCAGAACTTGCGGGTAATGCTGACATCCTCGAAAAACATCTTAAGTCCGTTTCCAGTATCACTGAATTTTTGAAACCGAGTGATTCTCATATTCTTCTTGGAGATTACAATCAACCTCACCTTGTCTGGTCGAGTTCCACTACTGGATTTCTGTATGCTGATCCTTTAGAGTCCAGATTTTCGACATCTAGCGCGTATCTCGTCGATGGAATGTCTACTATGAACCTGAAACAAATGAATGACGTCAAAAATAACAGAGGCCGTACATTGGATCTGATATTCATAAACGCAGAGGCTGTCTCCAAATGCACTGTGACAGAGGCTCCCGAACCTCTCATTGAAGCTGACGTGTTTCATCCTACTGTTGTCGCTAGAATGCATTTCCCAGAGCCTGTGAGTTACGATGATTCCATAGATGATGTGAGATTGGACTTTCACAAAGCAAATTTCGATGAAATTAGTCGAGCTATTGCTAGCTGCGATTGGATCCAGCTTCTTGATAACAATATTGACATGGCTGTCTCCATATTCATCAACACGCTTGTACAATTATTTCGCCGCTTTGTGCCCCCTAGGCGCCACCGAAGTAAACCCCCATGGTCGAATCACCAGCTGCGCGAACTGAAACGCCAGAGAGCGGCTGCTCTGAGAAGATATACTATTCACCGGAATCCAATAgaaaaagacgagtggTTTAATGCTGCCAGTCGAAGATACCGCACTCAAAACCGGCTACTCTACTCAAGGTACGTAAAACGCAAAGAGAATGATCTCAAACGTAACCCTAAAAGTTTTTGGgcttttatgaatgaaaaacgcAAGACGAGCGGTCTTCCAAAATCTATGTTTCTTGATGATAGAGTAGCTGAGTCTCGTATGGGAATTTGCGATCTGTTCGCTAAGCATTTCTCCAGCGTGTTCAAAGCGAATTTCATCACGGATCAAGCCATGGGCCAGGCACTAGAAAATGTACCCAGAAACGTAATTGAGATGGGAAATTTCACATTTACTGAGCAAAGCGTTCTTGACGCGATTCGCAGATTGAAATCTTCCTCGGCCGTTGGACCTGATGGAATTCCACCGATCGTTTTTAAAAAGTGTGCTGAGGCTATTGCTGCTCCGTTGTCAATCATCATCAACAAGTCACTATCAGAGGGGAAGTTTCCGGAGAAATGGAAAGCATCAGTGATGTTTCCTATCCATAAAAAATGTGATAAACGTGACGTGTCTACGTATCGTGGCATAACCTCTCTATGCGCTGGATCTAAGCTATTCGAGATACTTGTTGGTGGCGTGCTCTTCAATGCCGTCAAATCATACATCTCGCCTGATCAACATGGTTTCTTCAAAGGAAGGTCGATTAACACGAATCTGGTGGATTTTTCATCGTATTGCgtcagggcaattgagaatggtGCACAAATCGACACTGTTTACACTGACCTGAAGGCTGCCTTTGACCGTGTGGATCATCAATTGCTGATTGCTAAGCTGAAGCGATTAGGTGCTTGTTCACACTTCAGTGGATGGCTGAGTTCCTACTTAGTCAACAGGCCACTCACCGTGAAGCTCGGATCATCGCAGTCCTATACATTTACGAATTGTTctggagttccacaaggaagcaacctgggaccgttattgttttcgatatttttcaatgatgtGTGCTTGCTCATCCCACCAGGTTGTCGAATTCTGTATGCGGATGATCTCAAGCTCTACTTAACAGTTAGATCCACCGAGGATTGTAAGGAACTGCAGCGACTTATTAATCAATTTGAAAGCTGGTGTTGTTGTAATCGTCTGACCATCAGCGTCCAGAAATGTTTTGTCATCACCTTCATAcgaaaaaaatctccaattcACTGGGTTTACGACACTGGTGGATGCCAGATCGAGAGAGCCAGCGTTGTAAAGGACCTTGGAGTTCATCTCGATTCACAGCTCACATTCAGAGATCATTACTCTAACATAACTAATAAGGCGAACAGGAACTTAGGTTTCATAATGAGAGCTGCAAACAACTTTCGAGATCCTTACTGTCTCCGATCGCTTTACTACGCCCTTGTTCGATCGGTCCTGGAAACGGCTTCAGTGGTATGGACTCCATATGCGCACGTGTGGATAAAAAGAATTGAAGCTGTTCAATCTCAATTCATTAAATTTGCATTGAGATTTCTACCATGGACTAACTCGGCTGACCTACCACCGTATAAGAACCGTTGCCGTCTGCTTGGGATAGAAACTCTGCATCAAAGACGTAGCTCGGCAAAAGCTTTATTTGTCGCCAAAATTAGTGAAACCGATCAGCTGCCTAAACAAGTGTGTCCTGATTGCGTTGAACTGACCATTGATGCTTTTCAGTTTGCGAAACGTGTACGAAAAATGGATTTACTCTTGAAAAGCTCTTTAATAGATGCTGAAGACGAAATGCAGGTCGCTTGTTCAGCTGAGAGTGTAGTCTACGTAAATCAAAACGACCAATCAGCAGCACAAACGGAAAACTTCGACACTCATGTAGAAACCCAGAATATGGGCACAGAAAATGTTTGTCTGGTAGAGGAACATTCATCTCAAGTAGAAGAAATGAACGATGAAATTGTGGAAAATTGCCAACCATCCGACGGACACTTGCTGGATCCCGATGAAGTTTCTGTCGAGTACTTAGACGATGAGCCGGAATCAGAGTCTAAGCAACTCATAAAGCTTCTCATCGAATCAGTCAATGATTCGGGAACATGCAAATGGTTAAAAATAAGAGAGGATCTTGATTACAAAGAGCTCCTAGGAGACGATTTCGATGAAACTGATGAATTGGGACAGCATGATAGTTCCGATGAAGAATGTTTGCAACAGATGGAAACCAAACCTGAAAATTACACTGCAGAAATCGACGATGAACAAGTTGTCCGATGTTGTAGCAGAAAGTGCAAACTTGTCTTCAAAACTCGCGATGAACTTATAGAGCATGGCTCCAAAATACACGCAGCCGAAAGTTCGCATGTGAATACGGCAGGTCCGTACGAATGCGTTGTGTGCTATCAGAGATTTGAAACACGTAGATATCTACTTTGTCATCTAAGAAGATTGATACGTGACTATCGTTGTGAGATCTGTAACATGTACTTTGATGCTCCGCGGGATAAAAAATTTCACATGAAAAAGAGCCACCCAAATGATTGTAGAACAGTTAAAGTGTACCGTCTCGAGGATCAACCAGTAAAAATCTGTTGCGGTTGCGAAGAAAAGTTTCAAACATTAGAGGAACTCTACCAACACGGCGTTGATCAACATCAGCACCAACATACGTTCGTTCACAATGGCCGCGAAATACAATGCAACATATGTTACAAATATTTTAAATCCAAAGCTAGCCTAAGAAACCATCAAGTTCTTGTGTACAAACCAAAAACGCATGCATGTACGATCTGTGATAAGGCTTTCGAGTGTTCCTCGAAACTCTCCAATCATTTGAAAACACACCGGAAGGATCGTAAATTCGCTTGCTCTACTTGCGGGGGAACATTCAAGACAGCTGCCGACCTCAAAGGTCACGAGAGGGTCCACCAGGAAAAAAGTCATATATGCAATGTATGCGGTTCACGATTCAACAAGCAGTCCCACCTCAGGTCTCATTTGAAGACTCACGATGATAACGCGTACGAGTTTTCCTGTGATGAATGTCctagaaaatttaaagaaaaatcaaACCTAAAAAGCCATATGTTAGTTCATACCAAGAAGAAGCCATATAAATGCGAGTTTTGTCCGAAACTATTCCGGTATACCACTGATAGGAAACGGCACGAAATGGTACACACGGGGAATTATCCCTTCGGGTGCACTGTTTGTGAGAAAGCTTTTGCTAGAAATTCCCAGCTGCAAGCACATCGACGCGTTTGCGATAAACGGGAGAAATAG
- Protein Sequence
- MGSPYPLDTVEPHHISSCCSRPDSVLDGGDRAAQPPLSGKYSSDKESLLFHQSSGFSNSSQNVCYQQASLHIETTGGVKQLPGRTSISTMEASSMRSTVLTDQSSSSSLQSNRLSSSLRSRPGPVSAATEEVFQPAFQGKNISTSNNTLPDSSVVHRFPTVSDQNTRNAQHNDDFYNRRVITVFYQNVRGLRTKIDDLFLAASNTEYDVIVLTETWLNYDIHSAQLFGDYYTVFRNDRDSIMTGKKRGGGVLIAVSRKFSSSKTVAQVSDLVEHLWVNIHGPDSIIIVGAVYLAPELAGNADILEKHLKSVSSITEFLKPSDSHILLGDYNQPHLVWSSSTTGFLYADPLESRFSTSSAYLVDGMSTMNLKQMNDVKNNRGRTLDLIFINAEAVSKCTVTEAPEPLIEADVFHPTVVARMHFPEPVSYDDSIDDVRLDFHKANFDEISRAIASCDWIQLLDNNIDMAVSIFINTLVQLFRRFVPPRRHRSKPPWSNHQLRELKRQRAAALRRYTIHRNPIEKDEWFNAASRRYRTQNRLLYSRYVKRKENDLKRNPKSFWAFMNEKRKTSGLPKSMFLDDRVAESRMGICDLFAKHFSSVFKANFITDQAMGQALENVPRNVIEMGNFTFTEQSVLDAIRRLKSSSAVGPDGIPPIVFKKCAEAIAAPLSIIINKSLSEGKFPEKWKASVMFPIHKKCDKRDVSTYRGITSLCAGSKLFEILVGGVLFNAVKSYISPDQHGFFKGRSINTNLVDFSSYCVRAIENGAQIDTVYTDLKAAFDRVDHQLLIAKLKRLGACSHFSGWLSSYLVNRPLTVKLGSSQSYTFTNCSGVPQGSNLGPLLFSIFFNDVCLLIPPGCRILYADDLKLYLTVRSTEDCKELQRLINQFESWCCCNRLTISVQKCFVITFIRKKSPIHWVYDTGGCQIERASVVKDLGVHLDSQLTFRDHYSNITNKANRNLGFIMRAANNFRDPYCLRSLYYALVRSVLETASVVWTPYAHVWIKRIEAVQSQFIKFALRFLPWTNSADLPPYKNRCRLLGIETLHQRRSSAKALFVAKISETDQLPKQVCPDCVELTIDAFQFAKRVRKMDLLLKSSLIDAEDEMQVACSAESVVYVNQNDQSAAQTENFDTHVETQNMGTENVCLVEEHSSQVEEMNDEIVENCQPSDGHLLDPDEVSVEYLDDEPESESKQLIKLLIESVNDSGTCKWLKIREDLDYKELLGDDFDETDELGQHDSSDEECLQQMETKPENYTAEIDDEQVVRCCSRKCKLVFKTRDELIEHGSKIHAAESSHVNTAGPYECVVCYQRFETRRYLLCHLRRLIRDYRCEICNMYFDAPRDKKFHMKKSHPNDCRTVKVYRLEDQPVKICCGCEEKFQTLEELYQHGVDQHQHQHTFVHNGREIQCNICYKYFKSKASLRNHQVLVYKPKTHACTICDKAFECSSKLSNHLKTHRKDRKFACSTCGGTFKTAADLKGHERVHQEKSHICNVCGSRFNKQSHLRSHLKTHDDNAYEFSCDECPRKFKEKSNLKSHMLVHTKKKPYKCEFCPKLFRYTTDRKRHEMVHTGNYPFGCTVCEKAFARNSQLQAHRRVCDKREK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -