Trut034565.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056649.1:38554914-38557203[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.16 18 7.7 1.4 2 23 55 77 54 77 0.89 2 16 0.013 1.5 11.1 0.8 1 21 91 111 91 112 0.95 3 16 0.26 29 7.0 1.4 1 22 119 140 119 144 0.93 4 16 4.4 5e+02 3.1 4.6 2 19 206 223 206 228 0.89 5 16 0.3 34 6.8 0.6 1 20 237 256 237 257 0.94 6 16 1.4 1.6e+02 4.7 0.8 1 22 265 286 265 290 0.92 7 16 0.29 33 6.8 3.4 2 23 329 351 328 351 0.89 8 16 0.00087 0.099 14.7 1.1 1 21 364 384 364 385 0.94 9 16 0.00069 0.079 15.1 4.3 1 20 471 490 471 491 0.96 10 16 0.013 1.5 11.0 2.0 1 23 499 521 499 521 0.96 11 16 0.004 0.46 12.7 0.2 1 19 527 545 527 547 0.96 12 16 0.0044 0.51 12.5 3.2 1 21 555 575 555 577 0.95 13 16 1.6 1.9e+02 4.5 7.1 2 21 583 602 582 604 0.93 14 16 0.022 2.5 10.3 3.0 1 23 610 633 610 633 0.93 15 16 3.4e-05 0.0038 19.2 1.5 1 23 639 661 639 661 0.98 16 16 3.2e-07 3.6e-05 25.6 1.0 1 23 667 689 667 689 0.99
Sequence Information
- Coding Sequence
- ATGATTAGAAAATCGGATGCGTCCCTGCGAGAAATAGCGAGAAACCCCACCAAGCAGACCTCAACGCCGAACACGACTCGAACTATCAGCTACCCGACGGAGGACCAAATTGAAAGTTTGGAGGTGTTCGATACGTTTCAAGTTATTCGCCTGAAAGGCTTACGGTGCTGTGGTTGTGATTTAATTTTCGCTTCGAAAAGCCAACAAACTGAACACAGTTTGCAGCAACATTTCCAAGAAGTAGCAACGAACAGCGGGGATTCGGTTGTATTTCAATGTTCCAGATGCTATGAGTCGTTCCCAAATAGAATAAAACTACTCAACCACACCAAGAGCTACGAGTCGAACGAGATCTATCATTGTACGATTTGTAATGTTTTGTTCGACATTAAGTATCGTCTACAACAGCACCAGAACATGAGCAAAGCTCACCGCAAACAGTCCGAAGTAATGACCGTGGAATATTTGGAAGAAACTCCTAGCGTTGTTTTGCTCGAGAAAAAACGTCCCCAATCGCGTAAGCGAGTGACCAGAACGCTCACATACCCGGATGAAAGATTCATTCTTTGCATTGATGACACGCCCGAGTACGAAATAATCCATATGGGTGGCGAAAGATGCTGTGGATGTGATCTCAGTTTTATGACATTCCAAGAACTGCAGGAACACTGCAACCAAACGCATTCGAGAAAGAACGTAAATGCTCTACACGAATGTGATTtgtgctacgaaaattttgaactaGCACAATCTCTCAATCGGCACAAAACTGCGAGAGTACAAAAAGAAGTTTATTACTGCAAGTTCTGCGATTTGGTTATCGATGTAAAGTATCGTTTTGAGCAACATTTGAAATCAAATGTTACACACCAGACTGCTGTTCGGAAAGCGGGTATTGAACCGACATTCACCATGGAAGACAAATCTCCTAGCGATGCACGATCACTGGAATCGCTTATCGAAGTTTTGGAAGTTGAAGGTGTGCGGTGCTGTGGCTGTAATTTTGTTTGTACCAGTAGGGCTGAGCTGGAGAATCACTCCGAGCAGAAACATAGCTTAGCGCGCGTCGTGGAcaaagatgaaaatatgtttgAGTGCAACATTTGCTTCAAACGGTTCACCAAGTCTGGCCTTCTAACGTACCATAAGAATCTCTCCTTTCAGAAAACGGTGTATAAGTGTAAAAGGTGTGACTTGCAATCTGCGATAAAACATCGAATGTTGCAGCATGTTGGAAGTAGTGCACATCAAGGCGCGGATCtagaagaaaaattagaaatgagacagttttcttgttgttttgtgCGCTGTACGTTTACCTCCGAGGATCCAAATGATCTGCTTGACCACGTAGAGGATAATCACACATCTAAGCGAAAAGAGAATGCTGAGGAACGAGAATCAGAAAATTTTGTGTGCAGTGTGTGCCACAAATGCTTCCGAAATGAGAAATCTCTTCAATTACATCAATTCCCTAGAAGAAATGACGGTAAACATTGTTGTACGGAATGTGGTGCCAGCTTCCTCTATTTATCATCTCTTAATGCACATGAAAAAATTCATTCCGGAGTGCGAGAGTTTCAGTGTGATCTGTGCGATAGAGCATTCTTTGATGAACGAACTTTGCGAATTCATAAAGTGTGTCACAATGAAGAGCGTCCTTTTGTGTGTGATGTCTGTTCTAAGTCATTCCTGAGAAAGGGCAACTTAAAGGTTCACAAACGCTGCCATGCCGAGAGTATCTGGGAATGTGTACACTGCAGGTGTaagttcaaaacaaaacaatcccTTGATCTGCACATTCGGTGTCACACGGGGGAAAAGCCTTTCCAGTGCCGATTCTGCGAGAAACGATATAGCCACTCTACGGATCGCCAACGTCATGAAATGGCCGCCCATACGAAAATACGGCCACACAAATGTACCTACTGTCCGGCAGCATTCATCCGGAAACGCCAACTCATTCTTCACGAACGCACTCATACGGGTGACAGACCGTATGTTTGTGAAATCTGCGACAAACGGTTCGTCCAGATGAGCTATCTGAAAAAGCATCTCAATACACACGGGATGTTGGATAGAAGTGAGAATACCGCCTATCATGAAGGTGACTACGTGGTGGAAATGCTAAACGATGAGGGCGATGAAAACGAAGAAAGCTACTGTCTGGTGGACGTTGAAGATGATGAAATGACGATAGAAAGGTTCGAAGATGAGGAAACTTGTCTGCAGACGTGA
- Protein Sequence
- MIRKSDASLREIARNPTKQTSTPNTTRTISYPTEDQIESLEVFDTFQVIRLKGLRCCGCDLIFASKSQQTEHSLQQHFQEVATNSGDSVVFQCSRCYESFPNRIKLLNHTKSYESNEIYHCTICNVLFDIKYRLQQHQNMSKAHRKQSEVMTVEYLEETPSVVLLEKKRPQSRKRVTRTLTYPDERFILCIDDTPEYEIIHMGGERCCGCDLSFMTFQELQEHCNQTHSRKNVNALHECDLCYENFELAQSLNRHKTARVQKEVYYCKFCDLVIDVKYRFEQHLKSNVTHQTAVRKAGIEPTFTMEDKSPSDARSLESLIEVLEVEGVRCCGCNFVCTSRAELENHSEQKHSLARVVDKDENMFECNICFKRFTKSGLLTYHKNLSFQKTVYKCKRCDLQSAIKHRMLQHVGSSAHQGADLEEKLEMRQFSCCFVRCTFTSEDPNDLLDHVEDNHTSKRKENAEERESENFVCSVCHKCFRNEKSLQLHQFPRRNDGKHCCTECGASFLYLSSLNAHEKIHSGVREFQCDLCDRAFFDERTLRIHKVCHNEERPFVCDVCSKSFLRKGNLKVHKRCHAESIWECVHCRCKFKTKQSLDLHIRCHTGEKPFQCRFCEKRYSHSTDRQRHEMAAHTKIRPHKCTYCPAAFIRKRQLILHERTHTGDRPYVCEICDKRFVQMSYLKKHLNTHGMLDRSENTAYHEGDYVVEMLNDEGDENEESYCLVDVEDDEMTIERFEDEETCLQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -