Trut026891.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056648.1:241292361-241303728[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.45 51 6.2 2.1 1 23 83 105 83 105 0.97 2 10 0.00065 0.074 15.2 0.4 1 23 131 154 131 154 0.97 3 10 0.4 45 6.4 1.8 1 19 356 374 356 379 0.87 4 10 0.0038 0.43 12.7 0.2 2 23 387 408 386 408 0.97 5 10 2.1e-05 0.0024 19.8 1.3 1 23 414 436 414 436 0.96 6 10 0.0012 0.13 14.3 3.6 2 23 491 513 491 514 0.97 7 10 6.3e-05 0.0072 18.3 0.4 1 23 519 541 519 541 0.97 8 10 0.0052 0.6 12.3 0.4 2 23 548 569 547 569 0.96 9 10 0.0004 0.045 15.8 0.2 1 23 575 598 575 598 0.98 10 10 0.03 3.4 9.9 0.2 2 23 606 627 605 627 0.94
Sequence Information
- Coding Sequence
- ATGGAGACAGGCATTGCTACTTTTGATCCGAACGATCTAATTAGCTATTCGCCGGAAGAGTCCGAAGATGAGGGTGAACCTCCGTCGGCCTCTCGGCCTCCCACAGAGCAGACTTTATTATCACCGGTCAAACCCGAAGTCAACCAGATCGACCTAGCTGCCATTTCGGGAGAAGAAATTCAAATAACTGTGCCATCTGTGTCTGCCAGTGTTATCCAGGAGCGAAGTCCCCCCCAAGGAGCACGCTTCAAATGTAAGTTTTGTCCAGCATACACCCACACAGCGGAGGATTTCATCAAACACTTCATTATGCACTTCGGTAGAAACCGTATTTCCTACAAGGAAATGACTCATGAAGAGGTCCGAGCGTTGCCTAATGCAAAGGAAAAATTTGTCTGTGGTATCTGCGCTCGTTGTTTTGAGACGAGAGATGCTGTAAAAGATCATATGATAAAAGATCATGGTTTTAACGAAATTAAACCaagagaaaaatcagaaaaagtcGCCTCTACTGTTCCTACGGTCCCAAGTGTTAAGAGAAAACTGGACGATGAGTTCGTAGATTCACAAAAACTTCCGCTGAGTGATAGTTCCTCTTGTTCGTCTGTACAAAAGGAAAGTGTGAATAAACCTCCTTCAAAAAGCGCTTCGCCTGTAGTTCCGCAGTCCATAATTTCTGTGGCTTCAACTGCGACCGTCGTTTTACCGACTCCATCTTCATCGGTAATCTGTAAGAGTGACAAACCAAGCACTTCAAGCATGCAGCCATTGCAACAGTCTGGACAAGCTCAAATGGCCACAATTACGCATATACAGAAGGTGAACGAAGCGGAGGACGCGGAGCTCAACGAATTCCTCCAACCGATGTCATTGAAAACTCTCAAGCTAAAACTGTTGGCCGGATTGAAACTAAAATGTCCTCAGAAAGGGTGTGTTTATAAATTCGAGACACGCGCCAAACGAGATGTGCATCTTAAATGCCATAACATAGAACCGGCACACATCGGTCCGGGAGGACCTGGTCCTGTCGGTGGAGCTGCTGGAAAGGAAGAGAAGAAAGATAACTTCAAATGCTACCAGTGTGGAATTGAGTTTCCACGTTGGCGCGAGTGCTCCCAACATCTCTGGAAACAGCATCAAGTTGATGTGAACATGTTAAAGTGCCCAGTTTGTGATGTGCGCTTCGATTTTGCTGTTAAGGTGTACCGTCACTTGCAAACCCATCGTCCTGTGAAAGCATTTAGTTGCCCATCCTGCAGTAAATCGTTCGCGACTCAGTCACACCTGTCAGTTCACGAAATGCTTCACAAGAAACAGCGAGCGAAGCAAAAAACCGGGCCCGGTATTGAGGAGGCTAAAAACGAGAACGCGACCAACGCCGAGAATGAAGCCGACGcagaggacgaggatgaggatgctAGCAATCGGGAGGGGAAACCAACCGAAAAATTACCCTGGTATGCCGAGCGGAAATGTGACATATGCGGCCATATGTTTAGCACTTCGAAAATTCTTTCGAAACACATCAAAACGGTGCATCACAAGATAAAGCCCTTCATTTGCAGCGTTTGTGGGTACAAGTCGGCTAGAAAGGTTACCCTAACGatccatatgcGTCAGCACTCTGGCCAGAAACCGCTGGAATGTAAGGAGTGTACGTTCCGTACGGCCGATCCAAGCGCGTTGAAGTACCACGAAAAGCGGCATAGCAAGGACAAATGGTACGAGTGCAAGTTCTGCGGTCTGCTGACGATCCAGGCGAGCGCCCTTAAGACGCACATCCGCTCGAACCACCCGAAAGAGTACGAATCGATGAAGTGTGATCTGTGCAATTTCAGCTCGGTCAACCCGGAGCTGCTGGCGCGCCACAAGAGCGACCACAAGGCGGGTCTCATCAAGAGTGAGGATTCGCGCGATTCGGTATCCTCGAAGCGCTCGAAAAACGCCCCCGAGAGTTCATCCGACTGTTTTCTGCCGATCGAAAGTACCGACTCGGTGGTGCATGATGCCGGTGGATTCACCATTCCGGCCGTGATCAACGCACCGGTGGCACACTCAGAGGAAACACAGTTTCCGACCTGA
- Protein Sequence
- METGIATFDPNDLISYSPEESEDEGEPPSASRPPTEQTLLSPVKPEVNQIDLAAISGEEIQITVPSVSASVIQERSPPQGARFKCKFCPAYTHTAEDFIKHFIMHFGRNRISYKEMTHEEVRALPNAKEKFVCGICARCFETRDAVKDHMIKDHGFNEIKPREKSEKVASTVPTVPSVKRKLDDEFVDSQKLPLSDSSSCSSVQKESVNKPPSKSASPVVPQSIISVASTATVVLPTPSSSVICKSDKPSTSSMQPLQQSGQAQMATITHIQKVNEAEDAELNEFLQPMSLKTLKLKLLAGLKLKCPQKGCVYKFETRAKRDVHLKCHNIEPAHIGPGGPGPVGGAAGKEEKKDNFKCYQCGIEFPRWRECSQHLWKQHQVDVNMLKCPVCDVRFDFAVKVYRHLQTHRPVKAFSCPSCSKSFATQSHLSVHEMLHKKQRAKQKTGPGIEEAKNENATNAENEADAEDEDEDASNREGKPTEKLPWYAERKCDICGHMFSTSKILSKHIKTVHHKIKPFICSVCGYKSARKVTLTIHMRQHSGQKPLECKECTFRTADPSALKYHEKRHSKDKWYECKFCGLLTIQASALKTHIRSNHPKEYESMKCDLCNFSSVNPELLARHKSDHKAGLIKSEDSRDSVSSKRSKNAPESSSDCFLPIESTDSVVHDAGGFTIPAVINAPVAHSEETQFPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -