Trut010452.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056647.1:171775062-171776629[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.13 15 7.9 1.0 3 22 188 207 186 209 0.88 2 9 0.051 5.8 9.2 1.2 6 23 218 235 218 235 0.99 3 9 0.00034 0.039 16.0 2.7 1 23 241 264 241 264 0.97 4 9 2.5e-05 0.0028 19.6 0.6 1 23 272 294 272 294 0.98 5 9 0.00023 0.027 16.5 1.3 1 23 302 325 302 325 0.96 6 9 0.002 0.22 13.6 0.2 1 23 331 353 331 353 0.97 7 9 0.41 47 6.3 0.6 1 23 388 411 388 411 0.84 8 9 1.5e-05 0.0018 20.3 0.0 1 23 416 438 416 438 0.95 9 9 8.6e-06 0.00099 21.0 4.3 1 23 444 467 444 468 0.97
Sequence Information
- Coding Sequence
- ATGGCCGAGGAATCCGTGcctgtgtgtttcatttgtctcCAAGTCTCATCGGATGCAGTTCCAATTATGGAAGACGCAGGAACCAATCAAAATGAGCCAAGTAAACCTTCGTCGGAAGCATTCTCACGCGGATCCGTAATCTCGAAGCACTTCTGGTTTATGATGGAGGATTTACTAGGTGCTAGTATTTGTTGCAATTGCTGGTCAAAAATCGATGATTTCCATCAGTTTTACTGTGCTATTGAAGAGACTCATGAACAAAAACTACACTTTTCGATTTCGTGCGTTAAGgatgaatatgaagaatatgttGCCCCTGAGACAGATCAAGGCTCGCAAGAAGCCTTACATTACACAACTGCTGATGACCACCAAGATTACTTCGATTCCATCGTTGAAAAAAACGATGATGAGAAGGCTGTAACGtgttcaataaatgaacaatCGGTAACGGTGATTGATACGAAGCTAGCGAAACTACGAAAACGCCGGAAGAAACCTAAACCTGTCGCTAGGATAGCGAGAAACGATGAACTGATAGCCAAATATTGCAATATGCACTGTGATCAATGTTCGCTTGAGTATACCAACTTCAGAGAATTGCAGAAACATTCTGCGTTAGTGCATCAAACGCGTGCGTATGTTTTCTGTTGCGATCGAAAGTTCAACAATAGGACCCGACTATTCGAGCACATCCAGCGACATTTGAATCCCGAGCGATTTCAGTGCGATCTTTGCAAGCGCATGTGTGTCGATAGCGAGAGCCTCAAGAGGCATAAACTCAAAATCCATACTCCAGTCAATGAGAGACAGTTCAAATGCGATATGTGCCCGAAAGCCTTTGTTAGCAAAATAACACTTGCTACCCATAGAAACTACCATCTAGCTTTAGAGACGAAAGAGTACCCTTGCCAGCACTGTGATCGATTTTTCGGAAATGTATCTCTTCTTAGAGCACACGAGAAAAATCAGCACGCTTCAACATTCGAGTATGTTTGTGACACGTGTGCTAAAGGATTCAACCAACGGGGCCCTTTCTTGCGACATCTCCAAGAACATGGACCAAAGGCGCCGGAGGAAAAGGTACAGTGCCCGATTTGTTCCCGCTGGCTGCTGAAAGTGAGCATGAACAAGCATATCGTTCGGCACAATTCGCCCAGCTATCGGTGTGATTTGTGTGGCAAGGAATCACCCAACGTGCTTGCTCACAAGAGCCATATGCGGTTCGCCCATACGGACGCCAAATTTGCCTGCACCATCTGTGACAAAGTATTCAAGCGAGCGCTGGCACTGAAGGAGCATATCGCGGCGCACAGTGGAGAATCTCTCTACACGTGTCCCTACTGTCCGAAAACGTTCAACTCGAATGCCAACATGCACGCTCATCGGAAGAAGATGCATCACCAAGAGTGGCTCGAGACGAAAATGAAGCGATTCGCAAAGCATGAGTGA
- Protein Sequence
- MAEESVPVCFICLQVSSDAVPIMEDAGTNQNEPSKPSSEAFSRGSVISKHFWFMMEDLLGASICCNCWSKIDDFHQFYCAIEETHEQKLHFSISCVKDEYEEYVAPETDQGSQEALHYTTADDHQDYFDSIVEKNDDEKAVTCSINEQSVTVIDTKLAKLRKRRKKPKPVARIARNDELIAKYCNMHCDQCSLEYTNFRELQKHSALVHQTRAYVFCCDRKFNNRTRLFEHIQRHLNPERFQCDLCKRMCVDSESLKRHKLKIHTPVNERQFKCDMCPKAFVSKITLATHRNYHLALETKEYPCQHCDRFFGNVSLLRAHEKNQHASTFEYVCDTCAKGFNQRGPFLRHLQEHGPKAPEEKVQCPICSRWLLKVSMNKHIVRHNSPSYRCDLCGKESPNVLAHKSHMRFAHTDAKFACTICDKVFKRALALKEHIAAHSGESLYTCPYCPKTFNSNANMHAHRKKMHHQEWLETKMKRFAKHE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -