Trut035741.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056649.1:61633206-61635817[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.43 50 6.3 0.0 2 20 357 375 356 378 0.94 2 11 1.5 1.7e+02 4.6 0.9 1 23 384 412 384 412 0.81 3 11 1.4 1.6e+02 4.7 0.2 2 23 417 440 416 441 0.89 4 11 0.014 1.6 10.9 5.7 1 23 449 471 449 471 0.99 5 11 0.00021 0.024 16.7 4.6 1 23 479 501 479 501 0.98 6 11 0.00012 0.014 17.5 4.2 1 23 507 529 507 529 0.99 7 11 9.2e-06 0.0011 21.0 1.9 1 23 535 558 535 558 0.96 8 11 0.01 1.1 11.4 2.9 1 23 617 639 617 639 0.94 9 11 8.6e-05 0.0098 17.9 2.1 1 23 645 667 645 667 0.95 10 11 0.00094 0.11 14.6 0.2 3 20 675 692 673 695 0.92 11 11 0.00014 0.016 17.2 3.2 1 23 701 723 701 723 0.99
Sequence Information
- Coding Sequence
- ATGGTTGCAGACACTCCAAGTGTTGTGTATAATGAAACCACAGACGATTGTAGACTGGATACAACAGAGGAATGTTATGATGAAGAGATGATCGTTGAAAAGCTTGAAGATTCAGACGACGAAATCTTCGAAGAGCTGAAAATTGAACCAACATCCGTTTCATCTGTCAAGAAAAGTGAGCCTTTATTTGATGCCAATTTATGGCATGACTTTGATCTAGACAGTGATGACATTAAGGAAGAACTTGACGAGGAACCGGTGGAACTTCCACTTCCCCAAGTCGAAATAATAACCAATCCATTGGACATTCCGATTGAAGGTGTTAATTCGTTCTGTCGCTTGTGTCTGCGCGAGATTCCGAATCTTTTCCCGCTTATGTCCCGCATTCAGAATGTGCTAGTTCCGGAAATGTTTTACATCGTTACGGGGATTAATATTAATTTCCGCGACAAACTGCCCAAAAAAGTGTGCATAAATTGTTTGATAAGGCTCGACTATGCATACAATATTAGGAAGGATTTTCTGGACACGCATCGTACGCTGAAGAGCTTCTCCCTAACTAGGATACAGACCCTGTTGGAGCATTTGCAAAATTACCAGAAGGGAATTCGCCTCACGACGGAATCATATGGCGAGAAAATACTTCGCCAACATAAGGATATCATCCGGATGCGTCTAATCAAGAAGCAGGAGCATTTGGAGAAACAGGCAGGGAACGAAGTGCTTGAGGAGATCACCAAAAATATGCCCGTGGAAAAGTTTATGGCTGCTCTGGTTGACAAACCTCTCAAAGTTGAGCGTGATTCGCAAAGGCCTGTCGATACTGTCGATTTAGAAACAGTGATAGATTTAGAAGAATCAAACGAGCAATCGGAGGAGGAGCGTATAGAAGAGGGAAAAATGGTAGAGACTTTCATTTACGCGGAAGAAGTTAATCTAGAGCCAGAGTTTGTTGAAGCTCCTATGGGGGTACAGGAAACGGATGAACGACCCGTATTTATTCAGAGGAAACGTCAGCCAAAACGTGTCTACAATATAGATATGAAGGACACAAAGCCTGACCCAAACAAGTGTTATATTTGTGATAGCGTGTTTCCGGACACCGACGCACTGGATATACATCTGCCGGATCATGTGGATATGCTTCCTTACAGCTGTGATcgatgtgtggatgaaagtggGCAGGCGAAACAGTTCACTTCTCTTATTTTACTCCACCGGCACTTCCGAATGCATGCTGGTTCGATCAGATGTCCGATCGCCTCTTGTCCGATACAAACGTTCACTCGAGTGGCACTTTACGCCCatatgtcgaaccaccatagagcAGATTCGAAGACGAAATACACTTGCGAAATTTGCGGCCATCAATTGGAGAACAGAAAACGGTTCCATAAACACATGCGCTCCCACAAAGCGCTTGACGATGGACGTTATCCGTGCAGTCATTGTGACAAAAAGTTCGACACGAAAACCCGTATGACGCGCCACGAGCGTTCCCATACTCAGGAAAGACCGTACAAATGTAGGTACTGTGAAAAGACGTTCACCAACGAAACTAGTCTACATGGCCACGAGCGTACCCATACGGGTGAGAAAGGATTCCGATGTGATACTTGTGGCAAACGGTTCCGATCCCGGTACTGTCTGAATGACCACATCGCAGTGGCGCATGAAGGTCTGACGAGGAAGAAGAAACCACAGCTCCCAAGTACCCAGTATCCAAAAACTCAGTATCCAAAGTCTCAATTCTTCGCTGCGCCGAGGAAGTGTCAAGTGGAGGGCTGTGATTTCAGCACCACAAATAGGGCCAAGCACTACAACCACCTGGCGAGACACACACTGAAGTTTCACTGCGCGCATTGCCCGAAACGGTTCCCTTCGAAACAGAGTCTTGATATGCACGAATATATTCACGACGGTGTCAAACGTTTCTGCTGCGAGCAATGTGGCAAAAGTTTTCGTTTCAGGAACAGTTTAGTTGAGCACATGGACGCACACAAGAACGTTCGACCGTGGGCGTGCGACGTGTGCGGGAAGGCTTTTGTACGCGAACGAACGCTGAAAGAACACCGCTGGAAACATTCGGATACCTTGAATTATAAGTGTCGAATATGCGACAAAAAGTTTAAATATCGGGCAGATCAGTCGAAACATGAACGAACCCATACGGAAGCGGAAACCGATCGTACGGCTTTTCAATTCAGCAGTCAGGGAGATATGGACCTAATCGTCGAGGTAGTGGAGACAGATGATTGA
- Protein Sequence
- MVADTPSVVYNETTDDCRLDTTEECYDEEMIVEKLEDSDDEIFEELKIEPTSVSSVKKSEPLFDANLWHDFDLDSDDIKEELDEEPVELPLPQVEIITNPLDIPIEGVNSFCRLCLREIPNLFPLMSRIQNVLVPEMFYIVTGININFRDKLPKKVCINCLIRLDYAYNIRKDFLDTHRTLKSFSLTRIQTLLEHLQNYQKGIRLTTESYGEKILRQHKDIIRMRLIKKQEHLEKQAGNEVLEEITKNMPVEKFMAALVDKPLKVERDSQRPVDTVDLETVIDLEESNEQSEEERIEEGKMVETFIYAEEVNLEPEFVEAPMGVQETDERPVFIQRKRQPKRVYNIDMKDTKPDPNKCYICDSVFPDTDALDIHLPDHVDMLPYSCDRCVDESGQAKQFTSLILLHRHFRMHAGSIRCPIASCPIQTFTRVALYAHMSNHHRADSKTKYTCEICGHQLENRKRFHKHMRSHKALDDGRYPCSHCDKKFDTKTRMTRHERSHTQERPYKCRYCEKTFTNETSLHGHERTHTGEKGFRCDTCGKRFRSRYCLNDHIAVAHEGLTRKKKPQLPSTQYPKTQYPKSQFFAAPRKCQVEGCDFSTTNRAKHYNHLARHTLKFHCAHCPKRFPSKQSLDMHEYIHDGVKRFCCEQCGKSFRFRNSLVEHMDAHKNVRPWACDVCGKAFVRERTLKEHRWKHSDTLNYKCRICDKKFKYRADQSKHERTHTEAETDRTAFQFSSQGDMDLIVEVVETDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -