Trut045263.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056649.1:222537995-222548376[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0023 0.27 13.4 3.0 2 23 215 236 214 236 0.97 2 12 3.5e-06 0.00041 22.3 0.4 2 23 243 264 242 264 0.97 3 12 0.48 54 6.1 0.7 1 23 274 296 274 296 0.89 4 12 1 1.2e+02 5.1 1.5 3 23 321 348 319 348 0.88 5 12 0.89 1e+02 5.3 1.2 1 10 382 391 382 402 0.77 6 12 0.0026 0.29 13.3 2.2 1 20 413 432 413 433 0.95 7 12 0.027 3.1 10.0 0.3 2 23 442 463 441 463 0.87 8 12 0.00024 0.027 16.5 0.7 1 23 468 490 468 490 0.95 9 12 0.00062 0.071 15.2 0.2 2 23 499 521 498 521 0.97 10 12 0.00049 0.056 15.5 1.6 3 20 529 546 527 548 0.93 11 12 9.1e-05 0.01 17.8 0.4 1 23 559 581 559 581 0.99 12 12 0.00021 0.024 16.7 4.2 1 23 587 610 587 610 0.98
Sequence Information
- Coding Sequence
- atggtGAAAACTGAGAGTTGTGCATTATGTTTTGCAAATAAATCGAAAGGGTTTCTGGATATATTCTGTgtggaaaatcaatcaatgaatatttaCTCAATTATTTCTAAACATTTGTGGTTTGACttGAAGCCTTCCGACCAGTGTTATGTATGTGCCGAATGCTGGAAAAATGTTTACGATTTCCATTTGTTTTATtTCGACGATGGTCCTGATTAcaacgacgatgatgatgataataatGACACCGATGTGAAATATGCTACCGtaaagaaaacagaaatggcCAAAACCGGCAAACGTCTAGGAAGACCACCGAGAAACACAACCACCAAAAAAGATTCGGAAACAAAAATCAATGCATCTGAATATAGCCAATGTTCGAAGGATGGCGAGGAAAAACATGAAACGAAAAAAAGGAGAAGATTTAAGAAGGAATCTAGTGATGAAAGTTCAGAATCAGATACAGTCTCCAACTGTGGTGACCAGAGAAAAAGTTCTGGAAAACGTACAAGGGATGAGAGATTGTTCTCATATATTTCGGAATTTATTTGCCATATTTGCCCGGAACGAGTGGAGTTCGAACGGTTTCATCATGCAAACCAGCACTATCATGAAGTTCACCAAGAACCGGCGTATttgaaatgcacgaaatgtgATCGAAAATGTTTCTCTTCGGGGGGATTTATCAATCATATGGAGACTCATGATGACCCGGAAAAGaataaGTGTCCCATTTGTGGCAAAGTCACAGACCAGAGAATAACACTCAAAAAGCACATGAGAGCACATAGTCTCCAGATGGAGGAAACATTACCTTTTTCCTGCAGCCAATGTCCGCGTCGGTTTGGTTTGGAAAAGGCCAGAGATAAGCACGAACGGCTACACGAAAGAAAGTTTGTAGTGAAACGAGAGAAAGGGCGCGATGAAGTGCTGATAACTTTTTACAAGAAAATTTCGTGCGACATTTGTGATGAGGAGAAAAACGATCACATTACATACGACAACTTTTGGGATCTCAAAAATCATATGAACTCCGAGCACAATAAGACACCCTATCTGAAGTGCCCAATTTGCTTCAAGAAAAATATCTGTCGGCAACAGCTGATAGTTCATATCGACGTGCACGAGAATCCGGACAAATACAGATGTGATATTTGCGGAGAAGTGTATCAATTCCTGGAGAAACACAAGTTCAAAGATCACGAACGCGAAGCAGAAACAGTCCTTAAAAGCTATAGTTGCGAGCACTGTGGTAAAATGTTCCGGTGCGAAGGCAACCTCAAGTATCATATCGATTGCGTGCATGGTGTTAAGGATGTTGTGTGCGATGTATGTAAAAAATCATTTAGTAAAAAGGCAATCAGCGCCCACAAGCGATTAGTTCATAGTGATAAGATGTTTATGTGCGAACAGTGTCCAAAGATGTTCAAAAATCGCAACGGTCTGGAATTGCACAAGAGTGAACATGATATTGAGCTGCGAAAGCCAGTGAAATGCGAGCTATGTGGCAAAGAGATGCGTCGGGGTTCAAGCTTGGCGAAGCACATGAAGGTGATTCATTCACAAGAAGATCCAGTTAATTGCAATTTATGTGGCAAACAGTTTCGAACCAAGTTCCACATGATCCGTCATCGTACCAACACCTGCTCTGCAATGATAGACTCAAGGCCCTTCAAATGTGAGATTTGCGGAAAAGGATTCGCGATGCGACTTACAATGACCGAACACATGACAACACATACAAAGACAAGTCTGTATCAGTGTCCGTTCTGTTTCAAAACATTTGGATACATTTCCAATCTACACAAGCATCGCAAAAAAGCCCACCCGGAGGAGTGGCAGGAAGTTCAAACTAGACCTAAATTGCTTGTTCCGTTATGA
- Protein Sequence
- MVKTESCALCFANKSKGFLDIFCVENQSMNIYSIISKHLWFDLKPSDQCYVCAECWKNVYDFHLFYFDDGPDYNDDDDDNNDTDVKYATVKKTEMAKTGKRLGRPPRNTTTKKDSETKINASEYSQCSKDGEEKHETKKRRRFKKESSDESSESDTVSNCGDQRKSSGKRTRDERLFSYISEFICHICPERVEFERFHHANQHYHEVHQEPAYLKCTKCDRKCFSSGGFINHMETHDDPEKNKCPICGKVTDQRITLKKHMRAHSLQMEETLPFSCSQCPRRFGLEKARDKHERLHERKFVVKREKGRDEVLITFYKKISCDICDEEKNDHITYDNFWDLKNHMNSEHNKTPYLKCPICFKKNICRQQLIVHIDVHENPDKYRCDICGEVYQFLEKHKFKDHEREAETVLKSYSCEHCGKMFRCEGNLKYHIDCVHGVKDVVCDVCKKSFSKKAISAHKRLVHSDKMFMCEQCPKMFKNRNGLELHKSEHDIELRKPVKCELCGKEMRRGSSLAKHMKVIHSQEDPVNCNLCGKQFRTKFHMIRHRTNTCSAMIDSRPFKCEICGKGFAMRLTMTEHMTTHTKTSLYQCPFCFKTFGYISNLHKHRKKAHPEEWQEVQTRPKLLVPL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -