Trut009724.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056647.1:159173460-159175808[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.059 6.8 9.0 2.0 2 23 270 292 269 292 0.93 2 12 0.00078 0.089 14.9 0.1 1 23 300 322 300 322 0.98 3 12 0.016 1.8 10.8 7.0 1 23 330 352 330 353 0.93 4 12 6.9 7.9e+02 2.5 0.1 2 23 404 426 403 426 0.88 5 12 1.3e-05 0.0014 20.5 0.9 1 19 459 477 459 478 0.97 6 12 0.00058 0.066 15.3 0.3 1 23 490 512 490 512 0.98 7 12 6.5e-05 0.0074 18.3 3.3 1 23 520 543 520 543 0.96 8 12 0.00018 0.021 16.9 0.5 2 23 550 571 549 571 0.97 9 12 1.9 2.1e+02 4.3 0.7 2 22 582 602 581 602 0.92 10 12 0.022 2.5 10.4 0.1 2 23 610 631 610 632 0.94 11 12 0.00036 0.041 15.9 1.5 1 23 638 660 638 660 0.96 12 12 0.00011 0.012 17.6 3.5 1 23 666 689 666 689 0.98
Sequence Information
- Coding Sequence
- ATGTCCTCGTTTGGACTCGAGGGCTGTTTCACCTGCCTCCGGCAGACGGAAAACTTCCATCGCATTACCGACCACGACGATGTGAGCGGTGAAAACATTGAAGCGATCTTCGCGCAGCACTTTTGGTTTACCAAAGACGATTATAGGAATCGGATCGTTTGTACCAGCTGCTGGGAGAAAATTGATGAATTCCACAAGTTCTATTGTCATGTGGAGAAAATTCATGGGACCTCACAATTAGCCGAGATTAAGTCGGAACCTTCCACGGAGGAGATTATTTTTGAGCTTGGATTGACGGGGAAGGATGTCCATGATGATGAATGTGATAAAAAGATTGAAAACCCGGAAGAAGAAAAGCAGTTATCTAAAAGCCTTATCTTCTGCGAGCCAATTTGCGAACTAGCAACGGAACAATCGTTGGTTGCAGGAAATGAGAATGAATCGGAGATTAATGGTGACGGAGATGGTACGGTAGGCAACGACTTTCAACTAACGGACTCTAGCGATGAATCCAGTTCTGTCAGTTCCTCCGCTTCGGAAGATATCCCATTGGTGAGACGATTAGCCACCCGGAAAAGAAAACGAACTGAAGAGACTAAGGGTCAACATGTGTTCACTTGTCACATTTGCATCGAAAGTGGTGTGGAAGATGGGGAAAAATTCAGAACATTCTATCGATTGAATGCTCACTTCAAGAAAGAGCATAACATGAATGGTTACATATTTTGCTGCAGTCGAAGGTGGTCCTCAAGAAAGGCTTTTGTTGAACACTTCGATAATCACGAAGCAACGAAAGTTGATCAGAAACGATGTTTAGAGTGCAACTGTTTGTTTAACAATGAGAGCAGCTACGCTAAGCACATGTATTTGGTGCATACGCCGGAGGACCAGAAGCAGTTCAGGTGCGATCGATGCTCAAAGGCTTTCGCTGCCGAAGATCTTCTCAACAGTCACATCAATTGGCATGAAGAGGTAGAGAAAAAGAATCATCACTGCCCgatgtgcaataaatattttttcaacgcTGGCTATTTGAAGAAACACAATTTGAGCCATCATAAGATTAGCAAGCATGCGGCGGTGACGACAACATCGACAGTAGAaaaagtgttggtcagcaagaAGGAGGAGATCCCCAAAAAGCGAAAGAGAGGGACACCTGCGGACGTTGCCAAGCAGGATGAACTTATTCGTGGGTTTATTACGTTGAGCTGCTCGAAATGTGATTTTATAGGGCAAACATTCAAAGAGCTCTCCGAACATGCATTAGTTGTTCATCAATTGACGACTCCTTCGGTGGTATGTTGCGATAGACGATTCGGTAAGCGACTTCGGCTGTACGAGCATTGCCTCCGACATCTGAATCCGGACCACTTCAAGTGTGAGCTGTGCGGAAAAGCCTTCACTGATAGCTCCGGCTTGCAGCATCACAAGTGGTGGATACATACACCTGTCTCGGAGCGGCCGTTCAAGTGTGACATCTGTGGGGATGCTTTTGTGAAGGATTACCTCCTCAAGCAGCACATGGACAGACATATGGACAAGGAACGCAAAACGCATTCCTGCGAGCTGTGCAACAAAACCTACACAAATTCGCTGCAGCTGAAGTCACACATGCAGAAGCTGCACGGAGCGGTCAGTAATTGGGTTTGTGATGTTTGTGCCAAAGGTTTCACCCACCGGGCTCTACTGGAAGACCACCGAAAGACTCACACCGAGGAGGGTTTGGCGAGCTTGAAAATGCAATGCGAGAAATGCAACAAATGGCTAATCAATAAGAGAGGCTATCTACGGCATAAAAGACGCTGTTTCGACAATGGACCAGCCACGTGCGATGTTTGTGGTGTAGTGTCGGTAAATGAGGCCTCACTGGCAGCGCACAAAAAGCTACATCATTCACACCGTCCGAAATTCACCTGTACATATTGTGGGAAAGAGTTTAAAAAGCAGCTTCGATTAAAGGAACACGAAGCATCCCATGCAGGAATCGTTTTGTATAAATGTCCATACTGTCCCCGAATGTGCAATTCCAGCTCCAACATGTACACTCATAAAAAGACGGCCCATCCTGAGCAATGGGCAGAAGCCATGGCTGCTCGTGATGGCCCAAGCTAG
- Protein Sequence
- MSSFGLEGCFTCLRQTENFHRITDHDDVSGENIEAIFAQHFWFTKDDYRNRIVCTSCWEKIDEFHKFYCHVEKIHGTSQLAEIKSEPSTEEIIFELGLTGKDVHDDECDKKIENPEEEKQLSKSLIFCEPICELATEQSLVAGNENESEINGDGDGTVGNDFQLTDSSDESSSVSSSASEDIPLVRRLATRKRKRTEETKGQHVFTCHICIESGVEDGEKFRTFYRLNAHFKKEHNMNGYIFCCSRRWSSRKAFVEHFDNHEATKVDQKRCLECNCLFNNESSYAKHMYLVHTPEDQKQFRCDRCSKAFAAEDLLNSHINWHEEVEKKNHHCPMCNKYFFNAGYLKKHNLSHHKISKHAAVTTTSTVEKVLVSKKEEIPKKRKRGTPADVAKQDELIRGFITLSCSKCDFIGQTFKELSEHALVVHQLTTPSVVCCDRRFGKRLRLYEHCLRHLNPDHFKCELCGKAFTDSSGLQHHKWWIHTPVSERPFKCDICGDAFVKDYLLKQHMDRHMDKERKTHSCELCNKTYTNSLQLKSHMQKLHGAVSNWVCDVCAKGFTHRALLEDHRKTHTEEGLASLKMQCEKCNKWLINKRGYLRHKRRCFDNGPATCDVCGVVSVNEASLAAHKKLHHSHRPKFTCTYCGKEFKKQLRLKEHEASHAGIVLYKCPYCPRMCNSSSNMYTHKKTAHPEQWAEAMAARDGPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -