Trut040904.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056649.1:162185578-162197056[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.036 4.2 9.6 0.9 1 23 40 63 40 63 0.94 2 14 0.13 15 7.9 0.2 1 23 66 89 66 89 0.97 3 14 0.036 4.1 9.7 0.1 2 21 97 116 96 117 0.92 4 14 0.05 5.8 9.2 1.2 2 23 126 147 126 147 0.96 5 14 0.00019 0.022 16.8 1.6 1 23 153 175 153 175 0.96 6 14 3.2 3.7e+02 3.5 0.9 1 23 511 534 511 534 0.94 7 14 0.023 2.6 10.3 0.6 1 23 557 579 557 579 0.96 8 14 6.1 7e+02 2.6 5.0 1 23 587 610 587 610 0.92 9 14 0.00058 0.066 15.3 0.1 2 23 615 637 614 637 0.95 10 14 9.5e-05 0.011 17.8 0.6 2 21 646 665 646 666 0.93 11 14 0.00083 0.095 14.8 2.3 1 23 674 696 674 696 0.97 12 14 1.1e-05 0.0013 20.7 3.8 1 23 702 724 702 724 0.98 13 14 0.00098 0.11 14.6 4.3 1 23 730 752 730 752 0.97 14 14 0.0097 1.1 11.5 4.3 1 23 758 780 758 780 0.98
Sequence Information
- Coding Sequence
- ATGAGTTCTGACGAGGACTATTCACCACCAGTGGCGAAACACAAACGCAGGCGAGCTGAATCCGGAAGCGAGAAGGTTCGCGACCAGCTTTCCCTGCAGAAGTCGAACAGTTTGCGGCACATTTGTGTGTTGTGCAACCAGCAATTCTCGACAATTTGGGATTTATATCAACACAAACGGGAGGAGCACAATGTATTCCGATGCGGCCTGTGTAAGGAAGAATTTCTAGCTGAGGATGATTACAACAGTCACATTCGGACTGAACATGGAAGACGTGATCGGCAGCTTATGTGCCTAACCTGTGGCCAGTTGTTCCGATTAGCATCCCAGCTGAAAGACCACATCGAGTCCCGATGCGGGACGGACCAGAAGAATGAGTGCCCGGTGTGCCATTCCCATTTCTTAACACAGGAATCTTTGAACGCTCACATCATCCAGCATCTGGGAGAAAAAAGCCATTCGTGCAGCAATTGTGGTGCGAGTTTTTCCACCAGGGAGAGTTTGATTTCACACTCGACCACACATATGTTCCCGTATGACTGCAGTTCATGTAAGAGTCGATTCTCGTGCGTTGAAAATCTGCTAAAGCATCGGAGTGCTCGTCCGGACACCTGTGGACTGCCACAAAATAGTCAGACCAACAAAAGCCCGTCTTACAACAAAAaaaacacCAATCAAACTGACCTTCGAGTACCTACCCAAAATGTGTCATCACAGAAATCAGGACCAGTGCGCCAGCGAACCGCATCCGTCACAAATTTGTCGGACGAGTCTGAGGATAATGCTGATGATTGCTCCGATGGAGAAGAATCGGTGAAATCCTTACCTCCGGAAGAAGGCAGAAATACACCTGCGGAGGAGGATGAAGAAGAATACTTTTTAGGTTATTCTGATGAATCGATGGATGTTTCAAGAGAGaaaatGTACCCTACAATTGACATCGAAGCCATCGAGATCAAAGAAGAAGAAAGGGATGATGATTGCGAAGCGCAGGAGACAAACGGCAACGCGAACGAGAGTTCGAATGATGCGTCCGCTGATTCTAAAGAGGAAGAAGATACAGTCGATATAACAGTGATGTATGAAGATACAGAGTACATTATGGAAGAAACGGTACACAGCGATGATGCTAGGTACGACAGCAATCGGTCTGACGAAGATGAACCCGACAATGCTAACAGCGAGGATGGTGACCGCGATGATAATCAGCCTAACGCAAATGAACCAGACAATGAGAAAAGCGAGGATGAGAAGGAACAGTATTCAGAATGCAACGATTATATTGACGATGATTATTCTGAGGACTATAAACCTGCCAATGATAGAAAGAATAGAAGGCGAAAAATTGTAGATGATTCTGCGGTAGTCATGCGCAAGAAACGACGGGGCAGACCTCCAAAAGTAATTGTTCCGAGGATACTGGAGGATACCGAAGACATGATAGTAATTGATATGGCACAGCAAGAGCGGGAATTCAAAGCCGCACGCGTTGTTTTCGACGAAAACATCCAACAGGTCTCGGCGGATTGTTACCGTTGTATTCACTGTCCGTCACAGTTTACCAGTGAATATCTCATCGGCCGCCACCTGGAGCGAGATCATGATATCCAGTTGAATGGCTTCCTTAACATTCTCCATTCTGGTAGAATTTATACCAAAGAAAGACGTTTCAAGTGTAGATATTGTGAACGTTTATATGTTTATGAGAGATCCCTCGAGAAACACGTTGGTGTTCATGGGCCGAATGGGTTGCATATCCACAAATGTTCGTGCTGCAACAAACACTTTGAAACGGAGGACGAAGCGCAGACCCATGCAATGGAAACACATCGCGACCGTTTGGAGTGttctttttgtgaaaaagtataCAAAACCCCGGAAGTACTCTCCGCCCATATGAAATATGTGCACAAAGGGACCACACTTCGACTGAATGTTTGTCTGAAATGTGGCAAACAGTTTACTTCAAAGTCTCACCTAATGGATCATGAGCGAGCAAATTGTGGCGAAAATCCATTATATCAGTGTGAAATTTGCGACAAACGTTTGCACAGCGCTCATACGCTTAAAGCCCATTATGACATCCACGCAAACAAATTACCCTATTCCTGCGAGTATTGCGGGAAGAACTGCCGGACAAATTACCAGCTCAAAGTGCATGAGCGATCGCATACGGGTGAAAAGCCGTATGCTTGTGAATTTTGTCCGAAAACATTTTCCCACCACGAGACGTTATACACGCATCGATCCGTGCACACGGGTATGAAACGGTTCGTTTGCTGCGGCTGCGGTTCGAGATTCACGTGCATTTCCAACCTCCAGGCGCACCGACGAACCCACAAAACAACATGCGCTACGGTGCCCAACGTTGCGTACGTCGTAGGAAGGGCTGCATCACGATATCATCATCTACCCGATGACTATGAGCTTCCGTACCcgaaaaatcagaaaacggAATGA
- Protein Sequence
- MSSDEDYSPPVAKHKRRRAESGSEKVRDQLSLQKSNSLRHICVLCNQQFSTIWDLYQHKREEHNVFRCGLCKEEFLAEDDYNSHIRTEHGRRDRQLMCLTCGQLFRLASQLKDHIESRCGTDQKNECPVCHSHFLTQESLNAHIIQHLGEKSHSCSNCGASFSTRESLISHSTTHMFPYDCSSCKSRFSCVENLLKHRSARPDTCGLPQNSQTNKSPSYNKKNTNQTDLRVPTQNVSSQKSGPVRQRTASVTNLSDESEDNADDCSDGEESVKSLPPEEGRNTPAEEDEEEYFLGYSDESMDVSREKMYPTIDIEAIEIKEEERDDDCEAQETNGNANESSNDASADSKEEEDTVDITVMYEDTEYIMEETVHSDDARYDSNRSDEDEPDNANSEDGDRDDNQPNANEPDNEKSEDEKEQYSECNDYIDDDYSEDYKPANDRKNRRRKIVDDSAVVMRKKRRGRPPKVIVPRILEDTEDMIVIDMAQQEREFKAARVVFDENIQQVSADCYRCIHCPSQFTSEYLIGRHLERDHDIQLNGFLNILHSGRIYTKERRFKCRYCERLYVYERSLEKHVGVHGPNGLHIHKCSCCNKHFETEDEAQTHAMETHRDRLECSFCEKVYKTPEVLSAHMKYVHKGTTLRLNVCLKCGKQFTSKSHLMDHERANCGENPLYQCEICDKRLHSAHTLKAHYDIHANKLPYSCEYCGKNCRTNYQLKVHERSHTGEKPYACEFCPKTFSHHETLYTHRSVHTGMKRFVCCGCGSRFTCISNLQAHRRTHKTTCATVPNVAYVVGRAASRYHHLPDDYELPYPKNQKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -