Basic Information

Insect: Toxorhynchites rutilus
Gene Symbol: -
Assembly: GCA_029784135.1
Location: CM056649.1:98441528-98443247[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.04 4.5 9.5 1.9 1 21 238 258 238 259 0.96

2 10 0.00029 0.033 16.3 0.4 1 23 266 288 266 288 0.97

3 10 1.3 1.5e+02 4.8 1.0 2 22 301 321 300 323 0.87

4 10 0.003 0.34 13.1 2.0 1 20 338 357 338 359 0.93

5 10 0.00052 0.059 15.5 1.1 3 23 368 388 367 388 0.96

6 10 1.9e-05 0.0022 20.0 0.4 2 23 395 416 394 416 0.97

7 10 3.4e-06 0.00039 22.3 2.7 1 23 423 445 423 445 0.99

8 10 1.8e-05 0.0021 20.0 0.4 2 23 453 474 452 474 0.97

9 10 0.00027 0.031 16.4 1.9 1 23 480 502 480 502 0.97

10 10 2.8e-07 3.2e-05 25.7 1.4 1 23 508 530 508 530 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.04	4.5	9.5	1.9	1	21	238	258	238	259	0.96
2	10	0.00029	0.033	16.3	0.4	1	23	266	288	266	288	0.97
3	10	1.3	1.5e+02	4.8	1.0	2	22	301	321	300	323	0.87
4	10	0.003	0.34	13.1	2.0	1	20	338	357	338	359	0.93
5	10	0.00052	0.059	15.5	1.1	3	23	368	388	367	388	0.96
6	10	1.9e-05	0.0022	20.0	0.4	2	23	395	416	394	416	0.97
7	10	3.4e-06	0.00039	22.3	2.7	1	23	423	445	423	445	0.99
8	10	1.8e-05	0.0021	20.0	0.4	2	23	453	474	452	474	0.97
9	10	0.00027	0.031	16.4	1.9	1	23	480	502	480	502	0.97
10	10	2.8e-07	3.2e-05	25.7	1.4	1	23	508	530	508	530	0.97

Sequence Information

Coding Sequence: ATGTCCGTATTACAGATCGTTGATCAGCGGTGTCGTATATGTTCTAAAAATTCTACAAAAATAACTTCCCTCAGTGAAATCATAAATGGGAGAACACTGGCTGAAATGTTACGTTATTGTGTCACGATAGAGGTTTTTGAAGGCGATTACCTACCATTCCAATGTTGTGTAGATTGCAAGTCCGATCTAATTGTAGCGTATAATTTGGCGATACGTTGCAAGGAATCTGATGCTTTGTTTCGAAGTCAGCTTAGCGATAGTAAAGATGCTTTGCGactACTACCATATGAATTTAACAATGCGACAAATGCCAATCAACTAAAAACAGAGTTCAAGACGGAAACTGAATGTGTATATGTAGAGCCAGATCTTTATACATCAAACGATGAACAATCGAACATGTTGACATATGAGAAAAAcggaagttcatcaaatttcaATAACGATGATGAAATCGGCGAGGGATATATGCAAGTGGATGATAGGGAAGACGATAATGAGACAAATCGAGAAAACAACGTGGATGACAGCGATGACGAAAGTGTATTCGAGAGGGAACTAAGGAGGTGTGTGAAAACAAAAACTTCGTCTTCTCCCAAACGATGCTGCAAATGCAAGACGCGTTTGGAAAATGTAGAGCAAGTTGAGCAACATTCTAAAATGCATATCATGTCAAGAATTACCGACGTACAAATAACAACAGTTCGACCATTTGAATGCTCAGTTTGCTTTAATCGGTATACTAAGAAGCGATTTCTACTCCGTCATCAACGAGAAATGTACATCGAGAAAAAATTTCAATGCGAGGAATGTGATAAAGAATTTCTCACAGAATCTCAACTTGCGAATCACAAAGAGTCTCATGATAAAGATAACAGTGACAGAAAGGAACAACTCACAAAATGCTGTGCATGTTACCAACAGTTCGAGTCCGAAGAATTGTTGAGAAAACATGCTGATGAAATCCATCTTCCAGAAAGTCAATCTTCAACAAacgataatgaaaaaaaattcatttgtgACATCTGTCACCGCAGATACAAAACTAAACGGACATTGTTGGATCACAAATCAAAACCATATCGTAATGAGCAAAACATGTGTACCCAATGTGGTAAAATGTTTCGTGAAAAACGCTTTCTCATTGATCACGAACGTTTGCACCAAGGAGATCGTCCATTGGTATGTCCGGTTTGCTCGAAAACATTTGCCGTAAAGGACTCGTACAGAAAACATGTGAAGTCGCATTCCATTGAAAAGGATCGATTCAAATGTGAAATTTGTAGCAAAGGATTCAGGAAAAAGACGAACCTAAAAAGTCACTATATTACGCATAGGACGGATTATCGACCGATGAGCTGTAGTATTTGTTCGGCGTCATTCGCACGAAAGGCAACTCTCAAACTCCATATGAGGTTGCATACGGGCGAAAAACCACACAAGTGCAATATGTGTGATGCAAGCTTTGCATGTCCGAGCAATCTCAAACAACACATTATGGCACACGAGGGCATTAAACCGTACGCCTGTCACATATGCGGAAAGAGATATCCGAGACAGGACTATCTGCGCAGACATATGGTTTCGCATATCGCAAacaattga
Protein Sequence: MSVLQIVDQRCRICSKNSTKITSLSEIINGRTLAEMLRYCVTIEVFEGDYLPFQCCVDCKSDLIVAYNLAIRCKESDALFRSQLSDSKDALRLLPYEFNNATNANQLKTEFKTETECVYVEPDLYTSNDEQSNMLTYEKNGSSSNFNNDDEIGEGYMQVDDREDDNETNRENNVDDSDDESVFERELRRCVKTKTSSSPKRCCKCKTRLENVEQVEQHSKMHIMSRITDVQITTVRPFECSVCFNRYTKKRFLLRHQREMYIEKKFQCEECDKEFLTESQLANHKESHDKDNSDRKEQLTKCCACYQQFESEELLRKHADEIHLPESQSSTNDNEKKFICDICHRRYKTKRTLLDHKSKPYRNEQNMCTQCGKMFREKRFLIDHERLHQGDRPLVCPVCSKTFAVKDSYRKHVKSHSIEKDRFKCEICSKGFRKKTNLKSHYITHRTDYRPMSCSICSASFARKATLKLHMRLHTGEKPHKCNMCDASFACPSNLKQHIMAHEGIKPYACHICGKRYPRQDYLRRHMVSHIANN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -