Trut007884.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056647.1:124760761-124774728[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0001 0.012 17.6 0.7 1 23 1400 1423 1400 1423 0.97 2 13 0.0073 0.83 11.8 0.5 1 23 1519 1541 1519 1541 0.98 3 13 0.00048 0.055 15.6 4.7 2 23 1544 1565 1544 1565 0.97 4 13 0.00012 0.013 17.5 1.6 1 23 1571 1593 1571 1593 0.98 5 13 5.9e-05 0.0068 18.4 4.6 2 23 1600 1621 1599 1622 0.95 6 13 0.57 65 5.9 0.4 5 23 1635 1653 1632 1653 0.95 7 13 0.00098 0.11 14.6 3.2 2 23 1659 1681 1658 1681 0.96 8 13 0.21 23 7.3 0.8 3 23 1695 1714 1694 1714 0.96 9 13 0.00038 0.044 15.9 1.5 1 20 1721 1740 1721 1743 0.92 10 13 0.0027 0.31 13.2 0.1 1 23 1751 1773 1751 1773 0.98 11 13 0.00027 0.031 16.4 5.7 1 23 1779 1801 1779 1801 0.98 12 13 3.8e-05 0.0043 19.0 4.2 1 23 1807 1829 1807 1829 0.99 13 13 0.0028 0.32 13.2 5.4 1 23 1835 1857 1835 1858 0.96
Sequence Information
- Coding Sequence
- ATGGGTACAGTCGAGTGTCCTGTGTGTACACTATATCTCCGGGCTGATATGAGCCTGGAGGATCATCTGGAGACACATCCCAAGGATCAGGTTATCAGAGCACTAGTTTCGTTGGCTGCGAAGCCGCCAGCTACTCCACCTAGTGCGCCAGCAGCTGCAGCATCAACGAATCCTGTGCTGGGTGCATCATCATCGATGGAACTTGCTGCTACGCGAACATGCAGTTCTCGTTCTCATACACCACCGAATGCATTAATGTATCACACGAATGGGTACGAACCCGGTCCGCAAGCTTCCATTCTTTCGGCTAACCCATCACCAATCGTTACGAATTCTGTTCCAACTGCAATAGCGGTTGTAAAGGCTTCTGACATGGGCTTTCCAATAAACAACGTTATGATCGTCAAAAGTTGTAGTGCGAAATTCGTACATCAAACGCCTCCAGGTGGTAATAATCATGTCGTCGGGGGTGGACACAATGGAACGACCACGTCATACGCTTCTAGTTCAATCGACAGCAAAAACGTGTTCATCGAACCAGATCGAGGAGGAGAAAGTGGAACAACTTCCATCACCGTTCGTCGCCAAATTCCTTCGCTATATCCTCGTTATACAAATGAACGCTATTCTGGCCCTCCGCCTCCATACAGTACAGCCGTTTCATCTACGATATCTGCCAGCTCGCAGTTACAACAAGCCTCGATATCAGGTTTTGCTTCTAGATACGAGCCGAAAACCATCGTGCATCAGCCGAACTTTTATCCTCACCCTCCACCTGCACCTCCTCTAGCTCAATCGACGTCGGTGACAACTGCTTCACTACAATATCATCAGATATACCAGCAATCTCCGCCACCACCTCCTCTACCAATGAATCAACAAGCTTCTGAGGAAATTCAGCAAATGCATGAACAATTTCCAAATGCTACTAATATGAAAGCTAGAAGCTTTTCACAGGCGCAATATACCGAAAAAGACGATGGCGACTTCCTGGTTACTGAGAATCCCAAACAAGTAATCGAATACACCGAAATTGACGAAGGTGAATTCATGGTAATTGAGAAAATCATCAAGTCACCCTCGCGTGTCGTTCAAATTCCTAATGACACAGAGTGTCCATCTACATCTACGGACGATGTACAGCAATCAGTAGAGGAGGAAAAAGATGAACCACAAGAAGTGGAACACGAAGAATGTGAAATGGATATTGAGGAGGAACACAAATCACTTGACAAAAATGACCATCAAGAGCAATCCCGACCGCTGGAAATAGTGGAAAACGACGATGGCACATTTGCGGACAGTCATGGTTCGTTTGGATGTAAAGAAATGCCAAAACCAATGCTAGTCAGCAGTATTGGTACTGGGAAGAAGTGTAACAAATTTAACTTTATAGTGGAACCGTCTGACGCGAATTCTGCTTGCCCTGAGAGCAGTTTCTACTCACCACGCAAAAAGCTGACCAGtggtttgaaggtattgagcaACGTAAAGGTAACAACCGATTTATCCCAGGGCATTAAGGATATTATTCTGAATCTGAATTGCAAAACCAAAACCACGACTGTTCCTGGATGTAGTGGAACAGGTTCAAGCGATATGCACAGtaaaaaacaaaatctaacGGAAAATGAGAAATCAACTGCTGTTGTGAACAACAATTGCCAGAATGAGCTTATAATTAATACCAACGGAAATATGCCTCCTATCGATCTCAACAATGTCaataatattgaaattattAACGACGATGAAGAAGATAACCGTTCGGATGTAGACGACGAGTGCTATGTAGgatcaatggaagtgaaagctAGCACTGACGATGGAATACCACAAGTCGACAGCGGATTTTTCGAAGCGCGTTCACCGCAAAGTACAAGTTCGAGTACCACACCAACATCATCGGTTATAACCAGTGTGATCCGCATGACTCCCTATCCTTCTCCGGTAATCGCTCAATCCACGTCCCCTGAACAGCCTCAACAAGCGGCCTTGGCAACGTTTACTCCGCCACTGCAACCTCCTGAATCTGAACCATCTATTCAAGAGAAAACAGTCGCGACCGTTAGTGAAATTCCTTCCACTTCAAAACGCTCCTCCCTAGATTTTGCTCAAAAATCAATAACCCTGCCAATAACTAAGAAACATACTACAGGCATCTCGTCGGTCCCTCTTTTCAACAAGCCACCGAAAAAGTTGACCGTCAAGCTGAAAACTCCATTACCACCAGCGCCCCCGCCAACACCACCTCCTATTCCAGCTGTTCCATATGATAACAATGCCACTAGTATGGTTGTGCCAAAAGTGGAACACTCTATCGGTCACGTTGATGATCAGGTTGAACAATCGAATCAACAAACCTTGACTCTTACATTGCCTAGCCGAGTTAGCGACAGCGACAAATCTGAGGAAAACCCACCAGAAGCTCTTGGCGAGGAGAAATATTCCACATCTGTCAATAATCAGCAAATGACGCCACAGATCGGCTCAGCAACACAACATGAACCGTTCGTGCACGAGCGAACATCCTCCATTGATACTGTATTGAATACCTCTACAACTGAGGTCATTAGGACATCTTTTGTGACAGCTAAGACGGAGCAGGATTATCTAATTTCCGAAACAATTACCTTTACGCAATCTTCTACACAATGCAGTGACAACAATAGCAGCGAGCCCAGTACCAGCTTTTGTTTCCATGAAACTCAGCACCTAAAAGATGGAACGATCCCTATACCATCCCCTCCACAGGAAGATGCTCAAGATACACTTCCTATCAGTAATCAAACTGAATGTTACAAAATAACATTTATCGAAGATGAGTCGGCTATCATAAATAAGCAACAGAAGCAGGAACCCGATGTAATGGCGTCTGTGGAGGAGCCAATTCCACACGAGCTAGAACCAAGCGCTAGCAGTAGCAgttgtagtagtagtagtattaGTTCCACCGGTATTAAACCCGAACTTGGATGCGAGCAGAAAGCAATCATAGCGGAATTGTGTAGCATAGAGATGGACCCTCAAGTTCATTTGTTGTCACCGCACAGCGGGTCTCATGCAAGCGATAGTAAATCAGCAATTTCACTGCACTCGGAAGCATTGGAACCACCCCGGATgtcatttaaaaatattaaagttGAAAATGTGGAAACATTCAATAAGAACGAACTGGAACAGTTGGTATCATTAGAAATCGTCAGTGGCGGCAAACTGGAGCATGACATAGAAAAGCTCGAACCGCCAACGACCGATATCTGCGATCCTAAGTGTGACAAGAGTGAAGAACAAAAAGATCATAAAGACTTCCTCGAGGCTGGGCCATCGCGAGCGACGGTGACGGCGACAATAGAAGTTGATGAGCGCATTGGGAAGGACTCACAAAGTCGAGCGCAAGATTCTGAGCCGGTCTTTCTTGAATACAGCGCAGAGTACGACGATTACGTTCCAGTTAATGGTTATGGCAACGCACAGGGTCAGATTCCACTGTCCTGGGTGCAGAAGTTTAGCCCCCAATATACGCCTTTTGATGACCAGAATTCCTACATTGATCTGGATATGTGCAGTAGCAAGACTAATTCGAATAGCATTACGAGTGCCAGTGGCAGCAGAGGGAGCGTCAGTCGTATTGAATCCAGCATGGACCGTGCACCGTCGGCTGAAAGTCTGAACATCAGAACCGACGAGAAGATGCCTGCCAAAGGGGAGATATCCGAACAAGAAAGCAATGGTGACATGGAGTTATCTTGGAATAGGCTTTATCCCGTTCACGAAAATATTCCAATTTATCCGAGTTCGTACGATCTATCGACCGCACAGGAGTGCTGGAATTTAACGAACCGCAACCCTAGCGCACACAACAACAGCACCAGTAGCAGCACGAGTAACAATAACAACAGCACGGGACTTGTGAGTTCTAGCAGCATCATTACGGGGACACATTCGGAGCCTCACTTATCCCACCATCAAACGCATCATTCCCACGGTATTGGCTTTCAATTCTCTCAACACGATCAACAGCGACAAGATGTGCTGGGTGGGGGTGAAGATCAGATGGACGATAAGTCAAAGATCCATTTGAACTATGGCGCTAGTGGCAGTGCTGAAGGGAATTATATGGGAGTGATACCGAGTGGTAGCAGTGGTAGTGCTTTACAGGGCTCAACCGCTTCAAAGCTTATAAAGAACCGCACGTATCGATGCTCCGAATGTCCGAAATCGTTCAGTACGGTAAAGCAACGGCGTGTTCACATGATATCTGAGCACGAGATCGAGAGTAAAGTACATGTGCTATCATCCGCTGCTGTTGTTCCTGCTGCTGCCACCGCTACCACCGGTGGTATATCATCGACGATTACATCCGGATCGGCATTGAATTTATTCGCTGATGGATCGGGTGAAGGATCCAGCACAGCAATGTTGAGTAAGAAGATCAAAATCGAACCACAGCCAATATTGATGAGTTATAGTGCGCTTAAACATGAACTCGAGCAAAAGCTGGAAATTGGACTTGGCGGGAGTCTGCTCAGTGGTCCGTCGAGAAAACGGACGTATGTTTGCGGCACCTGCAAACAAGAGTTCGATACATTCAAATTATTCAACGCTCACTTGATGATCCATCCGGCAGAGTGTTGCACATGCGGCAGGAGTTTCAGACATTGGTCAAACTTTGCACTGCACGTGAAACGACATTTGGGCATCAAAGACCATCAGTGTAGGGTGTGTGGCAAGAAATTCGTCATCAAACAAAAGCTTATCGAACATATGCGAGTTCACACTGGAAAGGCACCAATCAAGTGCCCTGATTGTGATCAGCATTTCCGCCGGTTTTCCAATCTGGCACAGCATCGGAATCGGCATCATCTGAACAAAATTTCCTCTAAAAAAGACTATGTCTGTCATTGTGGTGAAGTTTTTCAATCGAAGGCTAAAATGGAGTGGCATAAAGAAATCCACGAAAacaaacccaaaagttgtccatTTTGCCGGGAGAAGTTCATACACAAAAACAGTCTCACGAGACACATCCGTTTGTCGCACACGGAGAAATACGTGAAATTGGAAATGGCCACAGAGATGTGTACCATTTGCAACCAACCGTACATAAAAACCAGCATGAAACGACACATGGAGACTCACACGGAGGAGCGTATGGCGTATTCGTGCACAATTTGTAACAAACTGTTCAGCACCAATTGGAACCTGAAGCAACACAAGTGGACCCATGCGAATCCCACCCTGAAACCGTTCCAGTGCAACATGTGTCCGAGTGGATTTGTGCGGGAGGCGGACTATATAACCCACATGAATGCCCACAAATCCATACGGCCATACACGTGTAATCACTGCGGTTGTCAATTCATCCGGAAGTACAACTGGATTCGGCACACGAGGGAACACGAAATGGACAAAAACTACACGTGCGAGATTTGCGGACGAAAATTCCATCGAAAATACTATCTCACGGAACACAAGCGGATACACACCGGCGAGCGGCCCTTCTCGTGCAATATCTGCGGTAAGACCTCGTCGACCAAGACGAACCACAACAAGCACATCAAAATTCACCACGCGCGGGATCCGCTGACGGCAGAGGGCTAA
- Protein Sequence
- MGTVECPVCTLYLRADMSLEDHLETHPKDQVIRALVSLAAKPPATPPSAPAAAASTNPVLGASSSMELAATRTCSSRSHTPPNALMYHTNGYEPGPQASILSANPSPIVTNSVPTAIAVVKASDMGFPINNVMIVKSCSAKFVHQTPPGGNNHVVGGGHNGTTTSYASSSIDSKNVFIEPDRGGESGTTSITVRRQIPSLYPRYTNERYSGPPPPYSTAVSSTISASSQLQQASISGFASRYEPKTIVHQPNFYPHPPPAPPLAQSTSVTTASLQYHQIYQQSPPPPPLPMNQQASEEIQQMHEQFPNATNMKARSFSQAQYTEKDDGDFLVTENPKQVIEYTEIDEGEFMVIEKIIKSPSRVVQIPNDTECPSTSTDDVQQSVEEEKDEPQEVEHEECEMDIEEEHKSLDKNDHQEQSRPLEIVENDDGTFADSHGSFGCKEMPKPMLVSSIGTGKKCNKFNFIVEPSDANSACPESSFYSPRKKLTSGLKVLSNVKVTTDLSQGIKDIILNLNCKTKTTTVPGCSGTGSSDMHSKKQNLTENEKSTAVVNNNCQNELIINTNGNMPPIDLNNVNNIEIINDDEEDNRSDVDDECYVGSMEVKASTDDGIPQVDSGFFEARSPQSTSSSTTPTSSVITSVIRMTPYPSPVIAQSTSPEQPQQAALATFTPPLQPPESEPSIQEKTVATVSEIPSTSKRSSLDFAQKSITLPITKKHTTGISSVPLFNKPPKKLTVKLKTPLPPAPPPTPPPIPAVPYDNNATSMVVPKVEHSIGHVDDQVEQSNQQTLTLTLPSRVSDSDKSEENPPEALGEEKYSTSVNNQQMTPQIGSATQHEPFVHERTSSIDTVLNTSTTEVIRTSFVTAKTEQDYLISETITFTQSSTQCSDNNSSEPSTSFCFHETQHLKDGTIPIPSPPQEDAQDTLPISNQTECYKITFIEDESAIINKQQKQEPDVMASVEEPIPHELEPSASSSSCSSSSISSTGIKPELGCEQKAIIAELCSIEMDPQVHLLSPHSGSHASDSKSAISLHSEALEPPRMSFKNIKVENVETFNKNELEQLVSLEIVSGGKLEHDIEKLEPPTTDICDPKCDKSEEQKDHKDFLEAGPSRATVTATIEVDERIGKDSQSRAQDSEPVFLEYSAEYDDYVPVNGYGNAQGQIPLSWVQKFSPQYTPFDDQNSYIDLDMCSSKTNSNSITSASGSRGSVSRIESSMDRAPSAESLNIRTDEKMPAKGEISEQESNGDMELSWNRLYPVHENIPIYPSSYDLSTAQECWNLTNRNPSAHNNSTSSSTSNNNNSTGLVSSSSIITGTHSEPHLSHHQTHHSHGIGFQFSQHDQQRQDVLGGGEDQMDDKSKIHLNYGASGSAEGNYMGVIPSGSSGSALQGSTASKLIKNRTYRCSECPKSFSTVKQRRVHMISEHEIESKVHVLSSAAVVPAAATATTGGISSTITSGSALNLFADGSGEGSSTAMLSKKIKIEPQPILMSYSALKHELEQKLEIGLGGSLLSGPSRKRTYVCGTCKQEFDTFKLFNAHLMIHPAECCTCGRSFRHWSNFALHVKRHLGIKDHQCRVCGKKFVIKQKLIEHMRVHTGKAPIKCPDCDQHFRRFSNLAQHRNRHHLNKISSKKDYVCHCGEVFQSKAKMEWHKEIHENKPKSCPFCREKFIHKNSLTRHIRLSHTEKYVKLEMATEMCTICNQPYIKTSMKRHMETHTEERMAYSCTICNKLFSTNWNLKQHKWTHANPTLKPFQCNMCPSGFVREADYITHMNAHKSIRPYTCNHCGCQFIRKYNWIRHTREHEMDKNYTCEICGRKFHRKYYLTEHKRIHTGERPFSCNICGKTSSTKTNHNKHIKIHHARDPLTAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -