Trut034559.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056649.1:38506955-38509919[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.9 6.7e+02 2.7 0.6 2 23 199 221 198 221 0.90 2 15 0.041 4.6 9.5 0.3 2 20 231 249 231 251 0.94 3 15 0.046 5.2 9.3 0.9 1 21 258 278 258 279 0.94 4 15 0.0028 0.32 13.1 0.1 2 21 440 459 439 460 0.94 5 15 0.0075 0.86 11.8 0.1 2 20 468 486 467 487 0.94 6 15 0.038 4.3 9.6 3.5 2 23 576 598 576 598 0.96 7 15 0.00074 0.084 15.0 1.3 1 21 638 658 638 663 0.94 8 15 5.1 5.8e+02 2.9 4.8 2 19 713 731 711 736 0.83 9 15 2.7 3.1e+02 3.8 3.0 1 20 752 771 752 773 0.92 10 15 0.0012 0.14 14.3 0.1 1 23 779 802 779 802 0.96 11 15 1.2e-05 0.0014 20.6 0.2 1 23 809 831 809 831 0.97 12 15 0.0002 0.022 16.8 1.7 3 23 839 860 837 860 0.96 13 15 1.7e-05 0.0019 20.2 0.7 1 23 866 888 866 888 0.97 14 15 0.12 13 8.0 3.5 1 23 894 917 894 917 0.96 15 15 6.4e-05 0.0073 18.3 0.9 1 23 923 945 923 945 0.98
Sequence Information
- Coding Sequence
- ATGCATAACCAGGACATAGGTTGCCGGATTTGCAACCAGCCGGAAACAACTCTGAATACGCTCAAATCCATTGACAGTACCGATGATGGCATCATCGTGgctaagatgattgaaaatcTGGCAGATATTAGGATCCCTGAAAACGATTGTTTCTCCCGGAAGATTTGTATGGAATGTTTACAGAAGGTTAAAATAGGTTACTCCATCAGGCAAACAATTCAAGAAGTGGAGAAAACCAACCATAATGGAGGGATTGAAATATCAACCAACCAAAATAGGGATCTCGAAATTCCCATACATGAGCAGGTTGCTTGTGGAAAAGAAATCAAATTGGAACATGTTTGGAACGAAGATGAAGAGTGCGAGTACGAGTACCTCGAAGAGGaatatttaaatgaaagcagGCAAAgtgtgaaaaatgaaaaaacgacTGGTGGTGGTTTACGATCCCCACAGAGGACTAATCAATGCGCCCCAACGATGGCAAGCGCCGAACGCGCACCTGAGAATACTAACTTCGTAATGCCGAAACCGGAAGTAATCCTGCGGACAATTGACCGCGTGGATCATCTGTTGGTTGAAGTAAAAGGGGACCGATGCTGCGGTTGTAGTTTCGTTGGAGCTAATCGAAGGGAACTGTTGCAACATTCGGCTAGCGAACACTCAATTGAGATAGAGGGAAGCGGAAATTATTGTCCCATTTGCTTTTTCAAATTTCACAGTGAGAATGCCCTCACAAGACACATAGACGAGAGTAAATCGAGAAGTATTTTCGTTTGTAAAAATTGTGAGAAATATTTCAATGATACGCGTAAAATGGAATCGCACCTGCAAAATTGCGAAGGTTCTTTAGGGAATACAGCCAACGTTGATCCTGCTATCAATGGGCCAACCGATATGGAAACGAATGAATCCGATATGGTGATTCTCCAAGTCCAGAAAAACGATGAGGATGAGTACGACGCCAGTGGAATCGACGAAAACGAAATTGACAGCGATTGGGAGAATATGGTAGAGGAACTGGAAGCGGAAGGACTTATCATGGATCCGCGTATAGTGGATCCTGAAGTGACACAGAAGCGAAATCAAAATCGATACAGTATGGAAGAAGACACAAGTTGTTTCGATGGAGAACGATTGTCTTTTATCCAAGAGTCCCAAATCGTGCAAAGGATAACGTTTAAAACATTCCAATTCGTCAAACTTAAAGGCGAACGATGTTGTGGCTGTGAGTTCATCTGCCAGAAACGAGAGCAGCTATTTAAGCATGCAAAAGAAAAGCACGAACAAGATGCTACTATTCCTTCCAATGGTCTGATTTGCCCAATATGCTACATGAACTTTGCAGATAAcaaacaactgctgaagcatatTAACTTCAATACCAGTCGAGATCTGTTGGTCTGCTCGCTTTGCGATGAAGCTTTCACGGGGAAAGGTTCCCTGCGGTATCACCAGGAATGCAGTGAAAAACACCAACAAAATTTCCAGCAACTGTTCGGCGGCAGGGAAGCTGATGAAAAATTACTTGTAGAGCTGAAGGATGACGATGTGATGAAGGCCTTCGAATACGAGTCCTTGGATGGAAATATCAGAGACAAAAATCGGATCCGATCCAACAATCGGTCGATTACAAGACACCGACATTTAAAAATGCCGGACAAACGGTTTATAACTCACGTGGAAGAATATAAGAATTATGAAACAATAATCGTTAGCGGAGAACGATGCTGTGGCTGTGGACAGTTCTTCGACACATATCACGAACTGCTGGAGCACGGGCGTCGAACGCATCTGATAGAGAATGCAGAATCGATAGGCGAGTATCAGTGCGGAGTGTGTTTCGCCCGCTTCGAATGGGATCGCGGTCTGCTAATGCACAGGTCTATGCGAAGAAAAGTTAATGAGTTCTACCACTGCAAGATTTGTGATTTAATGTTCTCCAAGAAGTACAGCATGGCAAAACACCTTCAGAATGCTCCGAACCATCTTGCAAGTATGATTGATAAAGCAATCGAAAAGGCAGTTCCCGTAGATCAGTTGGAAAAGGACGAAGATATAGCCGAAGCCCTTGAGCTTCACACGCGAACTCGTCCCACGTTGAGTGCAGCAAATGCAGCGAACAGCAAGTTCCACTGTTGCTTTCCAAAATGTGGTCAAGAGTTTGCTAATGAGGAGCTACTGTTGAATCACTGTCAGGATAAACACGCAGGGAAGCGGCGTGAAAATGATGCTGAACGATCAAGCGATACGCACGTATGCCCCGGTTGTTGCAAAGCGTTCGAAAACACCACCTGTCTGGTTTGGCACCGTTTCACTCGCTTCACCAAGCAATATCCCTGCCGATTCTGCGGGCAGATTTTCACCCGTTGGCCCGCCTATCGGGAACACGAGAATGTGGTCCACCTGGGAAAATCTAGTGAATTTCCCTGTGAAATTTGCAATAAAATCTTTCGCACTGCTCAACGATTGAAGGCACACATGGACGTTCACTCGCAAACACGCAATCAAATTTGTGACACATGTGGGGCGTGTTTCAGAAATAGAGGGGTACTGAAACGACATCGGCGATCTGTCCACGCCAACGACTATCCGTTCGATTGCAAAGTTTGCACGAAGAAGTTCCCCACGCAGGAACAACTCAATGCTCACAACCGAGTGCACACGGGCGTCAAACCGTACCCGTGTCGATTTTGTGAGCGAGCTTTCTCACATTTCACCGACCGAAAGCGACACGAAATGTCGACCCATACAGGCGAGCGCCCGCATCAGTGTCCACACTGTCCCGCGGCATACATCCGGAACCGAGAGCTGGTGATCCACATGCAAAAACACACCGAGGAATGTGCAGCATAG
- Protein Sequence
- MHNQDIGCRICNQPETTLNTLKSIDSTDDGIIVAKMIENLADIRIPENDCFSRKICMECLQKVKIGYSIRQTIQEVEKTNHNGGIEISTNQNRDLEIPIHEQVACGKEIKLEHVWNEDEECEYEYLEEEYLNESRQSVKNEKTTGGGLRSPQRTNQCAPTMASAERAPENTNFVMPKPEVILRTIDRVDHLLVEVKGDRCCGCSFVGANRRELLQHSASEHSIEIEGSGNYCPICFFKFHSENALTRHIDESKSRSIFVCKNCEKYFNDTRKMESHLQNCEGSLGNTANVDPAINGPTDMETNESDMVILQVQKNDEDEYDASGIDENEIDSDWENMVEELEAEGLIMDPRIVDPEVTQKRNQNRYSMEEDTSCFDGERLSFIQESQIVQRITFKTFQFVKLKGERCCGCEFICQKREQLFKHAKEKHEQDATIPSNGLICPICYMNFADNKQLLKHINFNTSRDLLVCSLCDEAFTGKGSLRYHQECSEKHQQNFQQLFGGREADEKLLVELKDDDVMKAFEYESLDGNIRDKNRIRSNNRSITRHRHLKMPDKRFITHVEEYKNYETIIVSGERCCGCGQFFDTYHELLEHGRRTHLIENAESIGEYQCGVCFARFEWDRGLLMHRSMRRKVNEFYHCKICDLMFSKKYSMAKHLQNAPNHLASMIDKAIEKAVPVDQLEKDEDIAEALELHTRTRPTLSAANAANSKFHCCFPKCGQEFANEELLLNHCQDKHAGKRRENDAERSSDTHVCPGCCKAFENTTCLVWHRFTRFTKQYPCRFCGQIFTRWPAYREHENVVHLGKSSEFPCEICNKIFRTAQRLKAHMDVHSQTRNQICDTCGACFRNRGVLKRHRRSVHANDYPFDCKVCTKKFPTQEQLNAHNRVHTGVKPYPCRFCERAFSHFTDRKRHEMSTHTGERPHQCPHCPAAYIRNRELVIHMQKHTEECAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -