Trut009738.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056647.1:159242740-159246055[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.3 1.5e+02 4.7 0.3 2 23 197 219 196 219 0.89 2 19 0.00056 0.063 15.4 2.9 1 23 251 274 251 274 0.95 3 19 0.00016 0.018 17.1 1.6 2 23 282 303 281 303 0.96 4 19 0.005 0.57 12.4 1.1 2 23 312 334 311 334 0.95 5 19 1.5 1.7e+02 4.6 0.3 2 23 447 469 446 470 0.89 6 19 1.4 1.6e+02 4.7 0.7 6 23 478 495 478 495 0.97 7 19 0.00013 0.014 17.4 3.2 1 23 501 524 501 524 0.95 8 19 0.00021 0.024 16.7 1.7 2 23 532 553 531 553 0.96 9 19 0.59 67 5.8 1.0 2 23 562 584 561 584 0.95 10 19 1.4 1.6e+02 4.6 0.3 2 23 704 726 703 727 0.89 11 19 2.2 2.6e+02 4.0 1.8 6 23 735 752 735 752 0.97 12 19 0.00092 0.1 14.7 2.1 1 23 758 781 758 781 0.95 13 19 0.00027 0.03 16.4 1.7 2 23 789 810 788 810 0.96 14 19 0.089 10 8.4 0.6 2 23 819 841 818 841 0.95 15 19 0.0024 0.28 13.3 0.6 1 23 847 869 847 869 0.99 16 19 3.1 3.5e+02 3.6 0.6 3 23 885 904 883 904 0.73 17 19 0.041 4.7 9.5 2.4 2 23 909 930 908 930 0.95 18 19 2.1e-06 0.00024 23.0 0.9 1 23 935 957 935 957 0.98 19 19 0.0045 0.51 12.5 3.9 1 23 963 986 963 986 0.98
Sequence Information
- Coding Sequence
- ATGACGGAACGAATTTGTCTCACCTGTACTAAGCTCACCGCACCGGAACAATTGGTAGTGGTCGGTGACCATAAAGCAGTTCTGGTGGCATTGTCCAAGCATTTTTGGTTCAGCaaAGATGAAATTCAGAACAGTATTCTCTGCTGCTCCTGCTGGGGTAAAATAGATGATTTTCAACAGTTTTATTGTGAAATCGAGCGTCTGTACACATCTCGTTTCCCTGCTGTCCAGGGCGAGTTTGTGGAGGTGAAACAAGAACTACATATTCACGAGATAGATGAACAAGATAGCACCACTATTGATGATACTCAGAATGACATCGATGGGGAGCAAGAGCATCCGACCGTTAAAAAGGAAATGTTTCATGCTGACCAAAAGTCTCTTTTCGGTGATGACGACTACGATGGAGGGTCGGATGAAGCTGAAATGTCGTCGGCTGTGAACGAGCTCGAAATAAAGAGATACTTATCAGGAGGAAATTCGTCTCCGCAGAAGCAGAGCAAAAGGGGAAATCGAGTGGAACGATCGGTGCAACATTGGCGGAAGAAGCTCAATAGTGAGCGATTTATCGCGGAGAACGTCAACATCGAATGTGACACGTGCGCACAGAAGTATGATAGCTTTCAGCAGCTACAGCAACATTCGCTGGAAGAACATCAGAGGCGGGCCTACGTGTTCTGTTGTAAACACAAGTTCAATAAAAAACCCCGGTTGATCGATCACATCCAATTCCATTTGAATCCAATGCAGTTCCAGTGCGATATATGTTTGAAAACGTTCCGACACAGCGAGGCACTGAAGTACCACAAGGACAAGCTGCACAGTGGGGAAGAGAAAACTCTGCAGTGCAGCGTGTGTCCGAAAAAATTTTCAACGAAAAAGTTTCTTAACATCCACGAAAAATACCACCGAAAGTTGGGTGAGAAAAAGTGGCACTGTGCGACCTGTGACAGATACTTCGCGTACGAGTCTATGCTTCGGCAACACAATCGGACGGCACATTCCAACGAATATACGTATGTGTGCCAGGACAGAGACAATGCTATTGATGATACCCAGAATGACCCATTTGGGGAGAAAGAAGGACCTAGCGTTGGAAAGGAAATGCTTCATGTTGATCAGAAATCTCGAATCGATGATGACGCTGATCAGGACGAGGGGGCTGATGGGGAGTCGGATGAGGATGAAATGTCGTCGGCTGTGAACGAGCcgcaaataaaaatggaatcatCAGGAGTGGATGCGACACCAGAGAAAACAAAAAGAGTAAATAGAGTGGATCAAAGTTGGCGGAAAAATCTCAATAGTGAGCAATTTATCGCGGAAAACATCACTATCGTATGTGACACGTGTGCAGAGAAGTATGAAAGCTTCCAGCAACTACAGCAGCATTCGCTGGAGAAGCATCAAAAGCGGGCCTACGTATTCTGTTGTGACCTTAAGTTCTGTACGAAACCCCGGTTGATGGATCACATTCAATTCCATTTGAATCCGTTGCAGTTCCAGTGCGATATTTGTTCGAAAACGTTCCGACACAGCGAAGCTCTGAAGTACCACAAGGACAAACTGCACAGTGGGGAAGAGAAAAATTTGCAGTGTAGCATGTGTCCGAAGAAATTTTCACAGCAAAAGTTTCTTAACATCCATGAAAAGTATCACCGTAAGTTGGATGAGAAAAAATGGCACTGTGCGACCTGTGACAGATACTTCGCGTACGAGTATATCCTCCGGCAACACAATCGAACGGTGCATTCCAACGAGTATACGGATGTGTGCCAGGATAGTACTACTATTAAAGATACTCAGATGGACACAGTTGGGGAGCAAGAGAGCCCCAGCATTAAAAAGGAAATGCCTTATGTTGATCAGATTTCCCTTTCCGATGATAACGTTGATGATGAAGGCGTTGATCGGCAGTCGGATGACGGTGAAATGTCAAACAAAGGATTGTCGTTGGCTGTGAACGAGTCCGAAATAAACATGGAATTATCAGACGTGGAATCGACATCGCAGAAGCAGCGAAAAGGGGGAAATCGGGTGGGAAGACCGGAGCAAAGTTGGCGGAAGAATCTCAATAGTGAGCAATTTATCGCGGAGAACGTCAACATCGAATGTGATACGTGCGCAGAGAAGTATGACAGCTTTCAGCAGCTGCAACAGCATTCGCTGGAAAAGCATCAAAAGCGGGCCTACGTGTTTTGTTGTGACCATAAGTTCTGCACAAAACCCCGGTTGATCGATCACATCCAATTCCATTTGAATCCATTGCAGTTCCAGTGCGATATTTGTTTAAAACCGTTTCGACACAGCGAGGCACTTAAATATCACAAGGACAAGATGCACAGCGGGGAAGAGAAAACTCTACAGTGCAGCATGTGTCcgaaaacattttcaaaacaaaagttTCTTAACATCCACGAAAAGTACCACCGTAAGTTGGGTGAGAAAAATTGGCACTGTGCGATCTGCGATAGATACTTCGCGTATGAGTCTATCCTCCGGCAACACAACCGAACGGTACATTCCAACGAATATACGTACGTGTGCCATGTATGTGCAAGGGGCTTCTACGTACGGACGTCGTACGTTGCGCATATGGAGACAcacgatgaaaatttgaaacgaACTAAGCCACCGGATGAGCGAGTTCAGTGCTCAAGGTGTGGAAGTTGGGTATACAAGAAGGGACTGCGAAAGCATATGCTCCGCCACTCGGGTACCCAAACGTGTGAACATTGTGGCCAGGAGTGTAAGAGCGAAATGGCGCTGAGGTATCATTTAGCACAGCACCGGATGGGTGATTTCAAATGTTCGCTTTGCGGAAAGGCTTTCAAACGACAGCTCACGTTGAAGGAACACATGGCCTCCCACACTGGTGAAGTATTGTACCAATGTGACTTCTGTGAGAAGACGTTTAATTCCCATGCAAATCGTGCTTCGCACAGGAAGAAGATGCATCCGAAGGAATGGTTTGAAGACAAGATGCGGAAAAATCCTGAACACCAGAATGAGGAGAGTCCAATAACTGCTGAAGCAATTTCATGA
- Protein Sequence
- MTERICLTCTKLTAPEQLVVVGDHKAVLVALSKHFWFSKDEIQNSILCCSCWGKIDDFQQFYCEIERLYTSRFPAVQGEFVEVKQELHIHEIDEQDSTTIDDTQNDIDGEQEHPTVKKEMFHADQKSLFGDDDYDGGSDEAEMSSAVNELEIKRYLSGGNSSPQKQSKRGNRVERSVQHWRKKLNSERFIAENVNIECDTCAQKYDSFQQLQQHSLEEHQRRAYVFCCKHKFNKKPRLIDHIQFHLNPMQFQCDICLKTFRHSEALKYHKDKLHSGEEKTLQCSVCPKKFSTKKFLNIHEKYHRKLGEKKWHCATCDRYFAYESMLRQHNRTAHSNEYTYVCQDRDNAIDDTQNDPFGEKEGPSVGKEMLHVDQKSRIDDDADQDEGADGESDEDEMSSAVNEPQIKMESSGVDATPEKTKRVNRVDQSWRKNLNSEQFIAENITIVCDTCAEKYESFQQLQQHSLEKHQKRAYVFCCDLKFCTKPRLMDHIQFHLNPLQFQCDICSKTFRHSEALKYHKDKLHSGEEKNLQCSMCPKKFSQQKFLNIHEKYHRKLDEKKWHCATCDRYFAYEYILRQHNRTVHSNEYTDVCQDSTTIKDTQMDTVGEQESPSIKKEMPYVDQISLSDDNVDDEGVDRQSDDGEMSNKGLSLAVNESEINMELSDVESTSQKQRKGGNRVGRPEQSWRKNLNSEQFIAENVNIECDTCAEKYDSFQQLQQHSLEKHQKRAYVFCCDHKFCTKPRLIDHIQFHLNPLQFQCDICLKPFRHSEALKYHKDKMHSGEEKTLQCSMCPKTFSKQKFLNIHEKYHRKLGEKNWHCAICDRYFAYESILRQHNRTVHSNEYTYVCHVCARGFYVRTSYVAHMETHDENLKRTKPPDERVQCSRCGSWVYKKGLRKHMLRHSGTQTCEHCGQECKSEMALRYHLAQHRMGDFKCSLCGKAFKRQLTLKEHMASHTGEVLYQCDFCEKTFNSHANRASHRKKMHPKEWFEDKMRKNPEHQNEESPITAEAIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -