Trut037672.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056649.1:98584588-98586321[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0015 0.17 14.0 0.8 1 21 243 263 243 264 0.96 2 10 0.0057 0.65 12.2 0.1 1 23 271 293 271 293 0.98 3 10 1.5 1.8e+02 4.5 1.0 2 22 306 326 306 328 0.87 4 10 0.054 6.2 9.1 1.6 1 19 343 361 343 364 0.86 5 10 0.0055 0.63 12.2 3.7 1 21 371 391 371 393 0.94 6 10 2.1e-05 0.0024 19.8 0.7 1 23 399 421 399 421 0.98 7 10 1e-07 1.2e-05 27.1 0.8 1 23 428 450 428 450 0.98 8 10 3.2e-05 0.0037 19.2 3.0 2 23 458 479 457 479 0.97 9 10 6.7e-06 0.00077 21.4 0.3 1 23 485 507 485 507 0.98 10 10 4.5e-06 0.00051 21.9 0.2 1 23 513 535 513 535 0.97
Sequence Information
- Coding Sequence
- ATGTCCTTATTAGAAATCGACAGACGGTCGTGTCGTATCTGTATTAGCAGCTCCAACGGGATAGTTTCTCTTAATGAAATCGTAAATGGAAAAAGTCTGGCAGAAATGTTACGTTATTGTGTTAAACTAGAGATTTTTGAAAACGATGACCTACCATTCCAATGTTGTGCGAATTGCAAATCTGATCTCGTTGTAGCGTATAATTTGGTGATACGCTGCAAGGAATCGGATGCTTTGTTTCGGAATCACGCAAAAAACAGCAAAGATGCTATGGGATTAACATCATTTGAGTCTACCAATTTGAGAACAGACTATCAGTTGAAAACGGAGTTCAAGGCGGAAAAGGAACGTATATACGCAGAACCGATACCAGATTTGCTTGCATTGAGTAGTGAACTATCGAACAATCTGAAATGCGATGATAGTGGGAGCTCATCAAGTGATACTAATGGGAATGATGATTACGATGACGATGATAAAATCGGCGAGGAATATATTCAAGAGGATGCTAAGGAAGATGAGAATGTGACAAATCAAGAAAACGACGTGGATGATATTGTATGTGAACGGAAACGTAGGAGGTATGTTAAGAAAAAATCCTCTTCTTCCCCCAAACGATGCTGCAAATGCAGGATGCGTTTGGAAAATATGGAGCAAGTCGAGCAACATTCTAAAATGCATATAGAATCGAGAATTAGCGACAAGCAAAAAATTGCTGCTAGACCGTTTGAATGCTCGGTTTGCTTTAAACGGTATACTAAGAAACGAGCTTTACTTCTTCATCAACGAGAAATGTTCATGGAGAAACAATTTCGATGCGATGAATGTGATGAAGATTTTCTCACAGAAGCCCAATTAGAGGACCATAAAGAAACTCATGATAAAGACAGCAGTGGTAGAAAGGGACAGCTTCCAAAATGCTGTGCTTGTTACCAACAGTTTGAGTCCgaagaattgttgaaaaaacatgCAGACGAAATTCACCTGCCAGAAAGCCAAACTTCCACAAGCGATAATGAAAACCAATTCACTTGTGACATTTGCCACCGTAGATACAAAACGAAACGGATATTGTTGGATCACAAGTCAAAGCCATACCGCACCAAGCAATATCAATGTGCCCAATGTGGGAGAATATTCCGGGACAAATGTGCCCTCTCCGATCACGAACGTTGTCACCAGGGAGAGCGTCCTTTCGTCTGCCCGGTTTGCTCGAAAACATTCGCCATAAAGGACTCGTACAGAAAACATGTGAAATCGCATTCTATAGAAGATGATCGTTTCAAATGTGAAGTTTGCGGGAAGGGGTTCAAAACGAAGGGGAACTTGAAAGATCACTACATTACGCATGCATCGGATTATCGGCCGCTGAGCTGTAGTCTGTGTTCAGCAACATTCGCGCGAAAGTCATGTCTCAAATCACACATGAGGATGCACACCGGCGAGAAGCCTTTCCAGTGCAATATGTGCGATGCAAGTTATGCATTTTCGAGCGACCTCAAACGCCACATTATGGCACATAAGGGGATAAAACCGTACATTTGTAATGTATGCGGGAGAGGATACCCAAGACAGGACTATCTGCGTAAACATTTGGCATCGCATAATGCAAACAGTTGA
- Protein Sequence
- MSLLEIDRRSCRICISSSNGIVSLNEIVNGKSLAEMLRYCVKLEIFENDDLPFQCCANCKSDLVVAYNLVIRCKESDALFRNHAKNSKDAMGLTSFESTNLRTDYQLKTEFKAEKERIYAEPIPDLLALSSELSNNLKCDDSGSSSSDTNGNDDYDDDDKIGEEYIQEDAKEDENVTNQENDVDDIVCERKRRRYVKKKSSSSPKRCCKCRMRLENMEQVEQHSKMHIESRISDKQKIAARPFECSVCFKRYTKKRALLLHQREMFMEKQFRCDECDEDFLTEAQLEDHKETHDKDSSGRKGQLPKCCACYQQFESEELLKKHADEIHLPESQTSTSDNENQFTCDICHRRYKTKRILLDHKSKPYRTKQYQCAQCGRIFRDKCALSDHERCHQGERPFVCPVCSKTFAIKDSYRKHVKSHSIEDDRFKCEVCGKGFKTKGNLKDHYITHASDYRPLSCSLCSATFARKSCLKSHMRMHTGEKPFQCNMCDASYAFSSDLKRHIMAHKGIKPYICNVCGRGYPRQDYLRKHLASHNANS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -