Basic Information

Insect: Toxorhynchites rutilus
Gene Symbol: -
Assembly: GCA_029784135.1
Location: CM056647.1:167691002-167692612[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3.7e-05 0.0042 19.1 1.5 2 23 161 182 160 182 0.96

2 9 0.032 3.7 9.8 1.5 1 23 188 210 188 210 0.97

3 9 8.4e-05 0.0096 17.9 0.2 1 23 224 247 224 247 0.93

4 9 1.2e-05 0.0013 20.6 1.4 1 23 253 276 253 276 0.95

5 9 8.3e-06 0.00095 21.1 0.4 1 23 282 304 282 304 0.97

6 9 0.0017 0.19 13.9 0.4 1 23 309 332 309 332 0.97

7 9 4.3e-06 0.00049 22.0 1.3 2 23 342 363 341 363 0.96

8 9 7.7e-05 0.0087 18.1 0.7 3 23 371 391 370 391 0.96

9 9 0.036 4.2 9.6 1.0 1 23 396 419 396 419 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3.7e-05	0.0042	19.1	1.5	2	23	161	182	160	182	0.96
2	9	0.032	3.7	9.8	1.5	1	23	188	210	188	210	0.97
3	9	8.4e-05	0.0096	17.9	0.2	1	23	224	247	224	247	0.93
4	9	1.2e-05	0.0013	20.6	1.4	1	23	253	276	253	276	0.95
5	9	8.3e-06	0.00095	21.1	0.4	1	23	282	304	282	304	0.97
6	9	0.0017	0.19	13.9	0.4	1	23	309	332	309	332	0.97
7	9	4.3e-06	0.00049	22.0	1.3	2	23	342	363	341	363	0.96
8	9	7.7e-05	0.0087	18.1	0.7	3	23	371	391	370	391	0.96
9	9	0.036	4.2	9.6	1.0	1	23	396	419	396	419	0.98

Sequence Information

Coding Sequence: ATGAATCTCCCGGAATCGGTTTGTCGCACCTGCCTAGCCGAGTGCATTCCGATGGTGAACCTTTTCAGTAGCTATGATctgccagcagcagcagcggccgACGATGTCGACGAGCAATCATCCACATCCAACGTTCCGATTCGAATCCAGCTCAGCAGCCTATACACTGATCTCACGCAGATTCCGTTGGACCAGAACCAACAGCAACAGTCGTTCCCGTGCGATTCGCCTATTTCAGCGCAGATATGCCTCCGATGCGCGGAGCGCTTGAAGGATTTCTATCTCTTCCGGCGGAGGGCTGTGAAGGCGTACGAAGAGTTGCAAACCAAGGCTAGCATCGCGCAGATAATCAACCAGTTGGATCACAGCAGCATGGGCAGCGTAAGGAATGATCGCCTGGAGGAGGACTTTGCGGAGGATTTGATTGCAGAGGATAAGCTGGGAAGCTGCTTCAAGAAGCCGCTGGCAGAGGGTGAGCTGCGGTGTGATAATTGTAGGAAAGTTTTTAAGAGCAGGAAAATGTTGCTTCGACATCAGGAGATTCACTCGAGCGAGAATAAGTATAAGTGTCGATATTGTGGTCGATGGTTTCGGGCCAGAAGCAGCTGGTACAATCATGAGCTGAAGCACCGGCATGCAGTGGACAACAAGGAGAAACTGGAGCGGGAGTTCTTGTGCGAGATTTGTGCTAAGAGCTTCAAGACGAAGAAGCAACTGGTGGACCATTTGGCAATAGTGCACGAGGGTGTTAAGCGGTTTCACTGTGACATCTGCAATAAAAGTTTCACGAGGAACGGTTCGCTGGCTGAGCACAAACTGATTCAGCACGCGGGGATAAAGCAGTTTTCCTGCAATATTTGTGGGAAAGCGTTCGGGAAGGAGGATTCACTGAAAACGCATCGCTCCGTTCATCTGGGAAAGCGTTTCAAATGTGAAGTGTGCTCGAAAACATTCCTCAAAAATGCTTTTCTCACCGCCCACATTGCTAAAGCACATCCCACCGAAGATGGACCAAAGCCAAACAAGTGCGAAGTATGTGGAAAAATATTCAGTTCTTCGTCTCATCTTAAGGATCATTCGCTCATTCATAGCGATACGCGGCCAGAAATTTGCAGACTGTGTGGGGCGTCTTTCCGACAGAAGCAGCAACTGAAGGTGCACATGTACCAGCACATGGGGAAACCATTCAAGTGTCAATTCTGTACCGCAGCGTTCGGAATACGAACGAGACTTACCGTTCACATGCAAAAGAACCATCCAACGGAGGTGCAGAATTTGGAATCTCAATCGCAGCAGCAACAGGAAACGTTGGCTGCTCCACCGGCTATTATCAACGAGCCAGACTTTGGAGATGGCGCCATCAAtgaagaaatattgaacgaaatctGCTATCAAATAGATGCGAACCAAATCGTCCTGCAGAACATTGAAGATGACGGGGTCAACTTGATCTACAGCAGCAACGAACACATCGTGTTCTTTGATGATGGGAACAACTTGCTGCCGGAGGAGATTGAAGGGGTGGACACGATTGGGCAGCTGTATGATTTTGGCAAACATGACTATGTACTTCCAGCGGGGAAAGAACTGAATAAACCCAACTCAGGCTAA
Protein Sequence: MNLPESVCRTCLAECIPMVNLFSSYDLPAAAAADDVDEQSSTSNVPIRIQLSSLYTDLTQIPLDQNQQQQSFPCDSPISAQICLRCAERLKDFYLFRRRAVKAYEELQTKASIAQIINQLDHSSMGSVRNDRLEEDFAEDLIAEDKLGSCFKKPLAEGELRCDNCRKVFKSRKMLLRHQEIHSSENKYKCRYCGRWFRARSSWYNHELKHRHAVDNKEKLEREFLCEICAKSFKTKKQLVDHLAIVHEGVKRFHCDICNKSFTRNGSLAEHKLIQHAGIKQFSCNICGKAFGKEDSLKTHRSVHLGKRFKCEVCSKTFLKNAFLTAHIAKAHPTEDGPKPNKCEVCGKIFSSSSHLKDHSLIHSDTRPEICRLCGASFRQKQQLKVHMYQHMGKPFKCQFCTAAFGIRTRLTVHMQKNHPTEVQNLESQSQQQQETLAAPPAIINEPDFGDGAINEEILNEICYQIDANQIVLQNIEDDGVNLIYSSNEHIVFFDDGNNLLPEEIEGVDTIGQLYDFGKHDYVLPAGKELNKPNSG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -