Trut018303.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056648.1:103609709-103611918[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.07 7.9 8.8 0.1 2 23 307 328 307 328 0.94 2 13 0.0069 0.78 11.9 1.0 2 23 334 355 333 355 0.95 3 13 2 2.3e+02 4.2 2.0 2 23 363 385 362 385 0.85 4 13 0.78 90 5.4 3.3 1 23 404 426 404 426 0.86 5 13 0.00022 0.025 16.6 3.2 1 23 432 454 432 454 0.97 6 13 1.3e-06 0.00015 23.6 0.5 1 23 460 482 460 482 0.99 7 13 0.0014 0.15 14.1 2.8 3 23 490 510 488 511 0.95 8 13 0.021 2.4 10.4 2.0 3 23 531 552 530 552 0.95 9 13 0.0016 0.18 13.9 3.7 1 23 560 582 560 582 0.98 10 13 1.1e-05 0.0013 20.7 0.2 1 23 586 608 586 608 0.96 11 13 5e-05 0.0057 18.7 3.4 1 23 614 636 614 636 0.96 12 13 3e-05 0.0035 19.3 5.5 1 23 642 664 642 664 0.98 13 13 9.2e-06 0.001 21.0 4.4 1 21 670 690 670 691 0.95
Sequence Information
- Coding Sequence
- ATGCCTTGTGTCGTTCCCTTCTGTGATCCGGAAGCGCAAAGTTTCTCTCTGCCTTTCCCTCGAAGTCACTTTCTGTACGAACGCTGGCGACAGGCAATCGCGATCGGTTCCGGCATTTCGCTTCCAGAGGACACTAATCCACTGGAAGCGGAGATTTGTCAGCAGCATTTCGAAGAGGTTGACGAGTACAGTGAACCGGTTATTTTTCACAACCAAAGCTCGAACCGCGTAGTTCACTTGTCGAGCTGTCGACTGTGCTTGCGGTTTGATTTCATCGAACGAACTGTTCCCCACATGATTGGTCAGACGATTGGTGATGTTTCGGTTGAGGAGTTACTGAAGAATACATTCAACACTCAGTTCGCTTCGGGCGATTATCCGGTAAAAATATGCGAAGAATGTCTTGTTAAGCTGGATGTAGTTGCAACCATTCGAAAACATTTTGTCGAGCGATCCAAGTGTTGGCGACGGATGGAAATCTTTATTAATGAGGAAAATCGCTTGCGCTACAAGAAAGCAACTAGACCTTATCTTAGAGCGACGATAACCCCGAAAAAGGAAGAgaatGAGCTTAAGGTGGATTTGACAGAACAGGAAAAGGAGACTGAAGTTGAGAGAGCTAGTGAAAGATTGGAAATAAACACAGAAATAGTTAACGGTGGATCGGATGGAGCCGAAACGATAGACGAGGATAACGATATCAATGATACGGAAGAGGACAATGATAATGAATATGCCCTGAGCGAGAAAGCTGTCGAAGAAGTCGAGGAAccctctgaaaaaccaatcgcgAAACGAGGcagaaaacgaaaaacaaaagtCGGTGAACCTAAAATTAGGCGACCAGTTGGTAGACCGCGAGGAAGATCGCTCCATGTTCCGAAAGAAAGGATACTGATAAAAGGATTGACAGAGCGTAAATGCTACATGTGTGTAAAATTATTCGATACCGCAGAGGAATTGTTCTCTCACATCGTAGCTCATGTTGATCATATTCTGCACTGCGAAGCATGTGATGAATCGTTTCCGAATCTGACCAAATACAACAGGCATCTGGCAAAACATGACCCGATCGAAAGGCCAGTCAAATGTGACCACTGCGAGCTACGGTTTACCGATGGGCTCGGAAAGCGACGACACGAGAAACAGAAACACAACATTGACCATCCGGTCTCAACGTTCCATAACCCAACAAAGCGCAAGGGGAAATATACGTGTCAACATTGCGGTAAACAGTGTTTATCGATGTCATTCCTGAGAGAACATGAAGATGCCCACGCTGGCATAAAGCGTCATGAATGTAAGTCTTGCGGGCGACTTttcgccaataaaaataatttggaaCGACACCACCTCATTCACACTTCAGAGAAGCCCTACAAATGTGACATATGTGGTAAAGCTTTCCGACAGTCCCCCATGTATAAAGATCATCTTCGGTTGCACTCGGGAGAAACGCCCTATGGTTGTAATGGGTGTGATATGCGCTTCACGTCAACCACGTTGCTAAGAAAGCACAAAATACGCCATCACGGAGCAGCTCCTTCGCAATCGAATTCGGGATTATCGACCCCCCGATCGCATAACTATTGCCGGTTTTGTTTTGTGTCCTTCAAGCGACATTCTCTGCTGGTGGATCATATCGAGCGTTTGCACGAAAGTGAAGACGTCGAATATTTCCAGTGTCACGTCTGTGAGCAACGTTTCGTAGAGAAGCATGCTTTCGAATCTCACGTGCGTAATCACGAGAAGAATTTCCAGTGCGAGTACTGTGACAAAGCGTTCAGCACGCTACAAGCGCTCAAAATGCACGAAGCCATTCACGACGGCGTTCGGGGCTTCACGTGCAAGACCTGCTCGAAATCCTTCACACACATTGCCAACCTGAAGCGTCACGAGCTGCTTCATCTGGGCATTAAAAGGCACGAGTGTGAATTCTGTGGAAAACGCTTTGCGCAATCCAATCAACTGCACACTCATCGAAGAACTCACACCGGTGAGAAACCGTACGAATGTCACAAGTGTGGGAAGCGGTTCGCCGATAACAGCACGCTGTGCAAGCACCGAAAAAGTGTGTGCAAACAAGTTTAG
- Protein Sequence
- MPCVVPFCDPEAQSFSLPFPRSHFLYERWRQAIAIGSGISLPEDTNPLEAEICQQHFEEVDEYSEPVIFHNQSSNRVVHLSSCRLCLRFDFIERTVPHMIGQTIGDVSVEELLKNTFNTQFASGDYPVKICEECLVKLDVVATIRKHFVERSKCWRRMEIFINEENRLRYKKATRPYLRATITPKKEENELKVDLTEQEKETEVERASERLEINTEIVNGGSDGAETIDEDNDINDTEEDNDNEYALSEKAVEEVEEPSEKPIAKRGRKRKTKVGEPKIRRPVGRPRGRSLHVPKERILIKGLTERKCYMCVKLFDTAEELFSHIVAHVDHILHCEACDESFPNLTKYNRHLAKHDPIERPVKCDHCELRFTDGLGKRRHEKQKHNIDHPVSTFHNPTKRKGKYTCQHCGKQCLSMSFLREHEDAHAGIKRHECKSCGRLFANKNNLERHHLIHTSEKPYKCDICGKAFRQSPMYKDHLRLHSGETPYGCNGCDMRFTSTTLLRKHKIRHHGAAPSQSNSGLSTPRSHNYCRFCFVSFKRHSLLVDHIERLHESEDVEYFQCHVCEQRFVEKHAFESHVRNHEKNFQCEYCDKAFSTLQALKMHEAIHDGVRGFTCKTCSKSFTHIANLKRHELLHLGIKRHECEFCGKRFAQSNQLHTHRRTHTGEKPYECHKCGKRFADNSTLCKHRKSVCKQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -