Trut025013.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056648.1:207290422-207292612[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.11 12 8.2 0.2 2 23 300 322 299 322 0.96 2 13 1.2 1.4e+02 4.8 0.3 1 19 328 346 328 348 0.78 3 13 0.04 4.6 9.5 4.8 2 23 358 380 358 380 0.96 4 13 0.0014 0.16 14.1 0.9 1 19 397 415 397 420 0.96 5 13 3.1e-05 0.0035 19.3 1.7 3 23 428 448 427 448 0.95 6 13 2.7e-05 0.0031 19.5 1.6 1 23 454 476 454 476 0.97 7 13 0.0035 0.4 12.8 1.3 1 23 482 505 482 505 0.92 8 13 0.0064 0.73 12.0 0.2 2 23 523 545 522 545 0.94 9 13 0.0077 0.87 11.8 0.1 2 23 554 575 553 575 0.97 10 13 0.00077 0.087 14.9 0.6 1 23 579 601 579 601 0.98 11 13 0.00022 0.025 16.6 1.3 2 23 608 629 607 629 0.97 12 13 7.7e-07 8.8e-05 24.3 1.5 1 23 635 657 635 657 0.99 13 13 3.5e-05 0.004 19.1 0.5 1 21 663 683 663 684 0.95
Sequence Information
- Coding Sequence
- ATGATGTGCATCGTCCCTGGATGCAATGCTTCTAATCAAGAGTACCTTATAGAGTTTCCGCGGAGTCAAAAACTTGCGGGCCGATGGAAGAGAGCGATCGAGCTTGGCACCGGTCAATCTTTGCGGCTTTACGATGATTCCAATAGACAGCTGCAGCAACTCTGTTTGGCTCACTTTGATGCGGAAAACAATCCGGGATTGATTGGTTATCAGGAACCGTGTTGTTTCAAAAATAGGAATGGCGAAGAGGTTCGCGTATACAGCTGTCGGCTTTGCATGAACTTTGACTTTCGCGCACGTCTTTTCGCCACATCCGGTGAGATAGAACATGTGTCACTAGCGAATACGATCAGGACCGTTATGAAGGTTTCTCTTGGCGGAGATGATTTTTTGACGCGTATCTGCGAAGTATGTCTAGTAAGAGTAGATATATTGGGACGTTGGGCAAAAGAAACACTCCAACAAGAATTCAACTTCCGAGAATTAATGGAACTGGCCAGTAAAGAGTCACAAACTGAGCTCATGGTCAAGGTGGAAACTATTTTATCAGAAACGAAGGAAGAATTAACAGTGAAAGCTACCCCACCTGATGATAGAACTTCTATAGCGGACTCTGATGATGGCGCGAAGAATGAAATTCCAGCTGTATCGAACCAACTAGCTTGCAATACACAGTACTGCTCTTCTGAGGACGATATTCCATTATCAAAATTACAGAAGAAGGATAAAAAATCAATTGCTGTCAATAAGAAAGTGGAAAACACAGCCATGAAAGAGCGTAGAAAGATATCCAAAGTTAAATTAGACCCTTTCAAACATAGTAAAAAGAAGCGTGGCCGAAAACCAACATCTCCAAAGCCGATACGACAAGAGTATGTGAGGCATATTTTAGCTAAGAAGTGCTACATTTGTAACGTGTTTCTTGAAGACAATAATGAACTTGTAGCTCACTTAACGACTACTCACGCCGGAAAAATTGACTATAGATGTGGAGCATGTGATAAGACCTTTGGAAAAGTCACAATTTTCAACCGTCACCTAAGCTGCCATGATATTTCCGTAAGACCAAGAAAATGCCATTTCTGTAGCTTATGTTTTAGCGCCAAAGAAAGCCTGAAAATTCACGAAAATAGAGAGCACGGAACAAACCATGTCCTACCAAAACGGTACAAACGCCGGAACAAAGTTTATCAATGTGAAACGTGTGGAAAGATTTTCCAGAATGATTCGCTACTTAAACAGCATGACcagtttcaacataaaaagctTCCAGCTGCCTGCTGTAAGTTGTGTGGAAGAACTTTTGCCACGAAGGCGAACCTGGAGAAGCATTCTATCGTCCATTCCAGGGAGCGTCCATATAAATGTGAAAAATGTCCATCATCATTTAAGACTTCGTATGCACTGACTAAGCATACACTTCTCCATCAAAATGTTCTACCGTATGAATGTCGTTACTGTGATGAACGTTTTCGTACCATTGCAACATATGCCAAGCATCGTTTCCTGAACCATAAGAATCAAATACTAGAACAGAATCAACGGAGAACGATGAATCGGTACATAACTTGCGCAATCTGCTCGGACGTGTTTAGCCGATCGATTGATCTCCATAAGCACATCAACGAGATCCATTCGGATCAAGTGTATCCATACATAACCTGTCCGGAGTGTCCGCAACAATTTCTCCAACAGCAGCAGCTCGCGATCCACAGGAACATCCACACCGATCAGTTCGTTTGTAATATCTGCGACAAACGCCACGCTTCCGCCATTCAGCTGAAAGATCACATGGAAACCCACAATCCCACCCAACCGTGGCAGTGCACTGTCTGTCTTAAACGGTTCAGTTTGCAGTCGAACTTTTCTCGCCATCGACTTATCCACCAGACCGAGAAGCGTTTCAAGTGCGATCTATGCGAGAAAGGGTTTTCCCAGAAAGGTCAGCTCATGAATCACAGACGAACGCACACAGGCGAGCGACCGTTTACTTGTCCTATCTGTGGGAAAAGCTTCGGCGATCAGCCCACGTTTTACAAGCATCGGAAACGATGTATGGACAAAGAATCAACAGTAGGGAGGCGGACGTGCAAGAACGAAACGAGTGGGTGTGAATTAGATAATCTATTTTGA
- Protein Sequence
- MMCIVPGCNASNQEYLIEFPRSQKLAGRWKRAIELGTGQSLRLYDDSNRQLQQLCLAHFDAENNPGLIGYQEPCCFKNRNGEEVRVYSCRLCMNFDFRARLFATSGEIEHVSLANTIRTVMKVSLGGDDFLTRICEVCLVRVDILGRWAKETLQQEFNFRELMELASKESQTELMVKVETILSETKEELTVKATPPDDRTSIADSDDGAKNEIPAVSNQLACNTQYCSSEDDIPLSKLQKKDKKSIAVNKKVENTAMKERRKISKVKLDPFKHSKKKRGRKPTSPKPIRQEYVRHILAKKCYICNVFLEDNNELVAHLTTTHAGKIDYRCGACDKTFGKVTIFNRHLSCHDISVRPRKCHFCSLCFSAKESLKIHENREHGTNHVLPKRYKRRNKVYQCETCGKIFQNDSLLKQHDQFQHKKLPAACCKLCGRTFATKANLEKHSIVHSRERPYKCEKCPSSFKTSYALTKHTLLHQNVLPYECRYCDERFRTIATYAKHRFLNHKNQILEQNQRRTMNRYITCAICSDVFSRSIDLHKHINEIHSDQVYPYITCPECPQQFLQQQQLAIHRNIHTDQFVCNICDKRHASAIQLKDHMETHNPTQPWQCTVCLKRFSLQSNFSRHRLIHQTEKRFKCDLCEKGFSQKGQLMNHRRTHTGERPFTCPICGKSFGDQPTFYKHRKRCMDKESTVGRRTCKNETSGCELDNLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -