Basic Information

Gene Symbol
Tf2-11
Assembly
GCA_029784135.1
Location
CM056649.1:103272952-103297707[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.079 9 8.6 0.2 2 23 1320 1341 1319 1341 0.98
2 19 0.0057 0.65 12.2 6.5 2 23 1379 1401 1378 1401 0.96
3 19 0.00038 0.043 15.9 0.6 2 23 1409 1430 1408 1430 0.97
4 19 5.7e-05 0.0065 18.5 1.1 1 23 1438 1460 1438 1460 0.99
5 19 0.0005 0.057 15.5 1.9 1 23 1465 1487 1465 1487 0.98
6 19 0.31 35 6.7 0.5 1 19 1498 1516 1498 1517 0.97
7 19 0.027 3.1 10.1 0.1 3 23 1582 1603 1581 1603 0.93
8 19 0.00085 0.097 14.8 2.6 1 23 1697 1720 1697 1720 0.96
9 19 0.00016 0.018 17.1 0.4 2 20 1727 1745 1727 1748 0.92
10 19 0.00068 0.078 15.1 2.2 1 23 1755 1778 1755 1778 0.98
11 19 0.00018 0.02 16.9 0.4 1 23 1981 2004 1981 2004 0.97
12 19 3.8e-05 0.0043 19.0 2.2 3 23 2012 2032 2011 2032 0.97
13 19 0.00027 0.031 16.3 1.0 2 23 2039 2061 2039 2061 0.95
14 19 1.3 1.5e+02 4.8 0.6 3 23 2213 2235 2212 2235 0.94
15 19 0.69 78 5.6 0.5 1 23 2239 2262 2239 2262 0.96
16 19 0.03 3.5 9.9 2.0 3 23 2271 2292 2269 2292 0.95
17 19 0.00099 0.11 14.6 2.6 1 23 2387 2409 2387 2410 0.96
18 19 0.00076 0.087 14.9 4.9 1 23 2416 2438 2416 2438 0.97
19 19 0.0039 0.45 12.7 0.0 2 23 2445 2467 2445 2467 0.94

Sequence Information

Coding Sequence
ATGCAAATAGACTCCGGGGTTAAATCTAACATCATTGATGACCGCACATGGGAAGCCATGAACAAAAATGGAGTGGACGTGATCGGAGAGATTCGTGATTCTGATCGAAGATTCAAAGCGTACGCTCAAACAGATTGCTTAAAAGTAATTGCTATGTTTAACGCAGAGATTGTCGTACCGGATGGGTGCAAACAGCTCAAGGCTGTGTCACGATTTTATGTTGTGAAAAACGGACCACAACCTCTTCTGGGTAAGCATACAGCTAAGCAACTGGGCGTTTTAGTCGTTGGATTGCCTAGTCAGCGTGAACCAATTCATCAGATAGAAGCGTGTCGGACATTTCCTTGCATACGAGGAGTAAAAATACACATTCCCGTAGATAAATCGGTGGAACCAGTAGCTCAGCGTCTCCGTCGTTTACCGTTACCTATGTTGAGAAAAGTAGATGAAAAGCTGAATGATTTGCTGTCCAAAGATATTATCGAGAGGGTATCTGAACCGAGCCGTTGGGTATCACCGATGGTCATTGTCGTCAAAGACAGTGGAGACATTAGACTGTGCATCGATATGCGACAACTGAATAAAGCTATACTCCGAGAAATACATCCGCTGCCGACGATCGAGGAGATACGTTGGAGAATGAATGGTTCCAAATATTTCTCTCGACTTGATGGTTCCAAATATTTCTCTCGACAGCTCGACGATGAAAGCAAACATTTGACCACTTTCATAACCCATCGAGGACTTTTCCGGTATAAGCGCTTGGTATTCAGGATTTCTTGCGCACCGGAAATGTTCCAGAAAATTCTAGAACAGATTTTGGCGGATTGTGAGAATACGGTAAATTTTATAGATAACATTGTTGTGACAGGCAGATCAGAAACGGAGCACGATATGGCTCTGGAGAAGGTCCTTAAGAACCTCAGTGAATACGGGGTTCTTCTGAATCAATCTAAATGTACTTTCAAGCTTACTGAAATTGAATTTATCGGTCAGCGATTCAATCAGAATGGAATGATACCTTTTCAAAGCAAGATAGCAGCCATACAAAgttttcgtccaccgaaaagtTGTGAAGAAGTCCGAAGCTTCCTAGGACTCGTAAATTACGTGGGTTCGTTTATTCCAAACTTAGCAACTATCTCGTTTCCATTGCGTGAACTGACCAAGAATACTTCAACTTTTATCTGGGAAAAAGACCAAGAAAAGGCTTTCAACGAACTCATTCGGCTGGTCGGAAACATTGAGACACTTGCTCATTtcgatccaaaacttaaaaCTAGAGTTGTGGCAGACGCGTCCCCAGTTGGATTAAGAGCAGTCCTTCTACAGTTCCGTGAAGGTCATCCTAAGGTCGTCGCATATGCCAGCAAGAGTTTAACGAGCACGGAGTGTCGGTACGCACAAACGGAGAAGGAAGCTTTAGCCCTGGTTTGGGCTATGGAGCGATTCCAGATTTACCTTTTTGGCATACGTTTCGAGCCTGAAACCGACCACAAACCTCTCGAATCTATTTTTACGCCAACTTCATCTCCATGCTTGCGGATTGAGCGCTGGGTCTTAAGGCTTCAAGCGTTCAGCTATGACATTGTATATCGTAAAGGGAAGTCAAATATCGCAGATCCATCGTCGCGATTATCACGTCCAACGGAAAACGAAGAATTCGATCCTGATTCCGATGTTTATATCCGGAATGTCATTGAACATACAGATGTTGACATAGAGGAAGTTGAGATAGCTTCGGCTAATgatccagaaacgcaagcattGAGAGAATGTATAGAGAAGGGAGTATGGAACTACGCAAATGATATACTGAAGCCTTACCATACATTTCGAGCTGAATTAGGGACAATTGGAGATATGATCGTTAGAGGTAGCAAGCTAGTCATACCTAAAAGTCTTAGGCAAAGATTGCTTGAACTTGGCCATGAAGGACATCCTAGAAAGACAAAAATGCAGCAGCGACTGAGATGTAACTGTTGGTGGCCTGGAATGGACGATTCTATTAGTCGAATGGTTGATGGTTGTGCAGGATGTAGACTAGTAAGCCAGCCAGATCGACCAGAACCTCTGACTAGAAGAGCTTTGCCTGACAAGCCATGGGTGGACGTGGCAATTGACTTTCTCGGGCCGCTTCCATCAGGAGATTATTTGCTGGTGATCATCGATTACTTTAGTCGACTTAAAATTAGTCAGGCTCAGCTCAGTGATTGGAAGGCTGATTCAGGAACGTACCTCTCCATGTACTATTCCACACCCTACAGCACTACTGGAAAAACTCCGAGTGAATTGATGTTCGGTCGAACTATACGGACTAAAATACCATCGATACATGACGTCAGCACAGGCACGGCGTTGCCTTCTTCAGACTACAGGGATAGAGACATGCACATCAAGGAAAAAGGGAAGATGGCCGAGGATCAACGTCGAAAAGCCAAATCATCACAGATTGTTACGGGCGATAAAGTGTTAATGGAAAATTCCATGCCTACCAACAAACTTGCCACTACCTTCAACCCCACAGCCATGACCGTTGTAGGTAAGCAAGGCCCACGAGTAACGGTCCAATGTGAAGAGTCTGGAAAAGTCTATGATAGGAATTCGAGTCATCTGAAAAGAGTTGACAACAATGCTAACGAAAAGTCCTTCAACGAAACTACTGTAAACACAGAGGACGGCGAACCGAAGAAGCAGAACGATGCGGGTTTTACTGGACCGACAACCATTGATGGAAATCGATTTACTTCACCGGAATCTGTTATCGAAGACAAGTCAACAGAGCACCTTCGTCCCAAGCGTGTGATTAAACGTCCAAGCCGATTCATGGACACACGCAACGCAGCGCTTCACGTCCATGTCAACGGCGAAACTGCCAACCGCTCggagaaaagagaaaaaaaacaactgtccAGCGGAGAAAAGAGCGAAGGCATTCGAGGAGTAAATTTGGTGCCGGACAGACGGCTAGTCGCGTGTGAAGTGAATTGGGTGATTTTTGCCTCGTGGCGCGAGGCGGGCCAAGTGGTGGCCAATAGCAAGCCTAAGGGCATTGTGCGGGCCCCAGAGGGCAATAAAGTTAATTGGTGTGGCCCAAAGGGGGCACAATTCTCAGCACCCAGTAGGTGCGCTTGGTGTGGCCAGAGGGCATTTGGCACTCACGGGGTCAAGGTCACGAGCCTGGAGTCCGAAATTTGTTTGGTGGCCCGAAACGTCCGGGGACCGGAAGAGCTGTTCCCAGAACACCGGGATCGAGCGACGAGCTCTCCCCAGGACACCGGGATCGAGCGAAGAGTTCTCCCCAGGACACCGGGATCGAGCGACGAGCTCTCCCCAGCACGCCGGGATCGAGCGACGGGCTCTCCCAGGACAGCAGACGCGATTTGGTCGGCAGATGACACAGACGCTCACGAATTGTTTGAAGCACGTATTGGCGAAAGGCTGTTGATTGAATTGATATTGACTACTTTCGGTATCCAGCTCGATGAATGTGACAGTCTACCGAATAATGTTTGCGGTCACTGTTTGAAAAGTGTGGAACATCTTAACAGTTTCCATGAAGCGATAATCAATAGTCAGGCACAATTAAATCTTTGGAAGGAAAGTGGCACATTAGATGTCATCTTACTCGGTGGACATTCTATGGAGGCATCTCCAGATTGCAGTGATTATGTTTTGGCGCAGGATATGGAAATCACCAGTGAATGCACAGCAAGAGAAACAGAGCGACAACAAGCATCAAGCGAGTTTAATGATGAGAATGAAGCAGCAGAACATGCGTCGGTTGAAAAATCAGCGATCAACGAAGACACGCAATCTGTTGGTGGCATGCAGGACGAAGGGAGTGACGCCAAAGACAATGAACATCAATCTCAATCAGCAGATCAGGATCGCACTAATGATACCGAGGTCCATGAGCAAAAAGCAAAATCATACGTTTCTTCATCTATCCCAAACAAATGTTACATCTGCAATGTTGTATCCGAGAGCAGGAGTCTTTTCGAAGTTCATCTGATGAGCCACATTGGCATGTTGCCATATCAGTGTTCGCCATGCAGTACAGCTTCCCACCCGATAGTATTGAGAACCGTTAAGTTGCTCAATAGGCATATTGAATCCCACGAGTTTCACATCAAGTGTTCCCATTGTCCTCATCGGTTTCGAAACAAAGAAACGTATAATTATCACATGAGATATAAGCATGCCAAGATTAAGAGAGGCGGAAAGTGTAAACTTTGCGGGAAAGAATTTCCAGATTTACGTAAATACAGGTATCACATGCGAGCCCATAGAGACCTAACAGCAGAACGATTCAAATGTACGAAGTGTCAAATTGCATTTCCGAGGCTCCAAAATTTGCAAAAACACGAAATGACCCACACACAAGCAGCGTATGTGTGTCCTTTCTGCAGGCAGAGTTTTAGTAGTGAATCCAGTTTCGATAAACACAAAATGACTCACATGCGACGGCTAAGTAATGGGGAATATGCCTATTATTGTTCGAAATGTAAAATTTACTTCCCCAAAGAGGAGGATTTGCTCAAACATGGGCCACATGAACTCGATCCGAAATATGTCGATAAAACGAATTATCTGTCCAAAACGTTGGAACGCTCCAGCATTTATCCCCGGAGTTGTGAAGAGAATGAGTGTGCGTTCATTGCTGATACAATAAATGAAATGGAGTCTCACCACAAGTACCAACATAGCCATAGAAGCAACGAGCGAAAAGCTTTACGGAACTGTACTATTTGTCAAGCAACTTTTGTCTACACATCAGAGCTCTATGCACACATAGATCAGGAGCACTCCACCTTTAAACCACCTACGATTCCCGACGAAGATTCGATAACGTTAGCGATATCGGGGTTATCAACAGATATGAGTGGCCTCGTTAGCTATGGTACATCGAATGAATCAGATGAAGGGCAGAAAGCCAAACCCATACGTATACTCAAGAAGTTCGTTTTGCCGAAAAGCCTTCAAAATGCCAAAAGCTATCCGCTAAGTTGCCTTGAAAAGGATTGCAACTTTGTAGCAAAATCATACAAGAGAATGATTCCCCACTATCAACGCCACTTCAAGATGCACAAGTGTCAACAGTGTGAACAAAGGTTCCCAACCGCGTCTTACCTTAAGCTTCACATAAAATTGAAGCATATGGACCCGGGAAAGAATACTTGTAATACTTGTGGAAAAAATTTCCCAGACAAATATAGTTTGAAAGAGCACATGCCCGTACATCAGATTGTTCGACAAAGGTACAAATGCGAATTCTGTGACAAAACATTCAAGAGTTCACCCTCTCGGTGGTGGCACACAAAAACATACCATAAACGTGAACAGAATTCAAAGGTCGAAGCTCTCTCGGCAGTCGATTCGACCATGAAAAATGATGTGAACAGTGAAATCGCCACCGAAGCACTTGATATTGAGGAAGGATTGCTTGTCGAACCATCAGAGAGTGCGTGGAAAGCTCTTCATGCAGATGAAGATGGGGACAAAACAGCGGGAGCTGAAGAAAAAATGTTAGCCTCGAGAGATACTCCGAGTTATGAACTGGATCACTTGGATCAAGAGAAACCCGAAAGCAACGCTTCGTTTGACACGATAATAGATGAGAAGCAAGCGAATTTGAGACAGCCGAATGATAATCCAAAATCGTCTGAGCCACAAGAAAAGAGTAATGAAGAATCCGATAGTAAAGCAAATCCATCGGCAGACAGTTATGAAGAAAGCGGTATTGTGAGCTTCGAGGCAAAAAATGAGCTAGATAGGCTATTTGAAGGCAAACCTGTCTGTGTTGCCAGGAATTTTATGCTtccaaaaactttgaaaaataaaagaagcTATCCGCGAAGCTGTCTGGAACCGGGCTGTGAATACGTGGCAAAAACACGAAGAAGTATGGCTGGTCACTATCGACGCCACTACAAGCCATACAAGTGCCAGCAATGTGAGCGAAGGTTCCCAACGGCCACTATGCTTAAGACGCATATAGCATCGGGACACATGAACTCAAAAAAGAACATATGCAATATTTGTGGAAAGCATTTCTCAGAGAAAAGTCTTTTATCGCAGCACATGTTCACACATCAAACAGTAAAATTGCCTCGTTGTCAATTTTGTGGCAAATCTTTTAACTATTTATCCGCCTGGAGGAGACACATAAATCTGTTCCATAACAAGAGACAGCAAAATATGGAGCGATCCGAAAACGATCCAAAAGAAAATAATTCATGTTATGAGGTTACCGCAGAATCCGTCACAGAGAAATCTCTAGATTCAGTGGATATAAAGATAGAGACACTCGATGAGGAATTGATGACCGATGAACATCCGGAGAACACAACAGAGGCTGCTCTGTCGGACGTTCGTGAAAACAACGTCGACAATCATGAAACCAGTCTTTCCGTTGCGGATGAATCAGTTTTTTCTGAGAACACAATCGAAAATGGCGAAGCAAATCTGCCCGTGGCGCTAAATACTTCGGAGCCCGAATCAGCCGCTCGAGGGATAACAGTTGGGAGCAATGAAATCAGCGTTTCAGCGATACATGCAATTGAAGCGCTGTGCATCGTCTTGGAGTATAATTTTCCAGCGCACTTACGCGAAAGCCAAACGTATCCACGACCATGTGAGGAATCTGACTGTGACTATGTAGCCAAGAATGCCAAACTGATGCGAATGCATCATCAGAAACATTATAAAGCCTTTCAGTGTCGCAAGTGCGACAGATTGCAATCGACGATAGGCTCGCTCAGGAATCACATAGAAAGGGTGCATTTGAAAACGCGAAAATTCGATCACTGCCAATTTTGTGGCCAATCATTCAACTCCGTGTCCGGTTGGAGACAACACGTGAAGAAGTTTCATGAGCAAGAGTTGGAGAATTTGAAAATTGCTGTACTGTTGGAAGACACCAAAGAACATTTGGTCCATAGCGGTGATGACTCCGTGGACACAATATTGGAGGCCCTCGATACTCAGGACACCCTGGATAAAATTGAAACGATGTCCGTCTTCCTTGAATACAATTTCCCAATGAGCCTACAACAAATCGAAACGTATCCACGATCATGTGAAGAGCCTGGCTGTACGCATGCGGCCAAGAATATTAGACTAATGAAGATCCACTACCAGTATCACTACAAACCGTTTCAATGCCGTGAATGCAGCAAACGGTTCTCGATCAAAAAGCTACTTAGGGACCACATCGAGGTACATCATTTGGACACACGGATATATGATTGTGCTATTTGTcacaaaattttcaaacgaaaaCATAATCTACAAGGACATTTATTCAAGCACCAAGATTTCGAAACGCGGAAATGTGTGCTTTGCGATGCCTCGTTCTCGGACGCGGAACTGTTGAAAAGCCACATAATTGAGGTACACGTGGGCTCCACTTACGATACACCCGCAGTTACGGCTACAACAACGGAGAAAGACACTGTAAAAGTCGAGATGAATGTTTGA
Protein Sequence
MQIDSGVKSNIIDDRTWEAMNKNGVDVIGEIRDSDRRFKAYAQTDCLKVIAMFNAEIVVPDGCKQLKAVSRFYVVKNGPQPLLGKHTAKQLGVLVVGLPSQREPIHQIEACRTFPCIRGVKIHIPVDKSVEPVAQRLRRLPLPMLRKVDEKLNDLLSKDIIERVSEPSRWVSPMVIVVKDSGDIRLCIDMRQLNKAILREIHPLPTIEEIRWRMNGSKYFSRLDGSKYFSRQLDDESKHLTTFITHRGLFRYKRLVFRISCAPEMFQKILEQILADCENTVNFIDNIVVTGRSETEHDMALEKVLKNLSEYGVLLNQSKCTFKLTEIEFIGQRFNQNGMIPFQSKIAAIQSFRPPKSCEEVRSFLGLVNYVGSFIPNLATISFPLRELTKNTSTFIWEKDQEKAFNELIRLVGNIETLAHFDPKLKTRVVADASPVGLRAVLLQFREGHPKVVAYASKSLTSTECRYAQTEKEALALVWAMERFQIYLFGIRFEPETDHKPLESIFTPTSSPCLRIERWVLRLQAFSYDIVYRKGKSNIADPSSRLSRPTENEEFDPDSDVYIRNVIEHTDVDIEEVEIASANDPETQALRECIEKGVWNYANDILKPYHTFRAELGTIGDMIVRGSKLVIPKSLRQRLLELGHEGHPRKTKMQQRLRCNCWWPGMDDSISRMVDGCAGCRLVSQPDRPEPLTRRALPDKPWVDVAIDFLGPLPSGDYLLVIIDYFSRLKISQAQLSDWKADSGTYLSMYYSTPYSTTGKTPSELMFGRTIRTKIPSIHDVSTGTALPSSDYRDRDMHIKEKGKMAEDQRRKAKSSQIVTGDKVLMENSMPTNKLATTFNPTAMTVVGKQGPRVTVQCEESGKVYDRNSSHLKRVDNNANEKSFNETTVNTEDGEPKKQNDAGFTGPTTIDGNRFTSPESVIEDKSTEHLRPKRVIKRPSRFMDTRNAALHVHVNGETANRSEKREKKQLSSGEKSEGIRGVNLVPDRRLVACEVNWVIFASWREAGQVVANSKPKGIVRAPEGNKVNWCGPKGAQFSAPSRCAWCGQRAFGTHGVKVTSLESEICLVARNVRGPEELFPEHRDRATSSPQDTGIERRVLPRTPGSSDELSPARRDRATGSPRTADAIWSADDTDAHELFEARIGERLLIELILTTFGIQLDECDSLPNNVCGHCLKSVEHLNSFHEAIINSQAQLNLWKESGTLDVILLGGHSMEASPDCSDYVLAQDMEITSECTARETERQQASSEFNDENEAAEHASVEKSAINEDTQSVGGMQDEGSDAKDNEHQSQSADQDRTNDTEVHEQKAKSYVSSSIPNKCYICNVVSESRSLFEVHLMSHIGMLPYQCSPCSTASHPIVLRTVKLLNRHIESHEFHIKCSHCPHRFRNKETYNYHMRYKHAKIKRGGKCKLCGKEFPDLRKYRYHMRAHRDLTAERFKCTKCQIAFPRLQNLQKHEMTHTQAAYVCPFCRQSFSSESSFDKHKMTHMRRLSNGEYAYYCSKCKIYFPKEEDLLKHGPHELDPKYVDKTNYLSKTLERSSIYPRSCEENECAFIADTINEMESHHKYQHSHRSNERKALRNCTICQATFVYTSELYAHIDQEHSTFKPPTIPDEDSITLAISGLSTDMSGLVSYGTSNESDEGQKAKPIRILKKFVLPKSLQNAKSYPLSCLEKDCNFVAKSYKRMIPHYQRHFKMHKCQQCEQRFPTASYLKLHIKLKHMDPGKNTCNTCGKNFPDKYSLKEHMPVHQIVRQRYKCEFCDKTFKSSPSRWWHTKTYHKREQNSKVEALSAVDSTMKNDVNSEIATEALDIEEGLLVEPSESAWKALHADEDGDKTAGAEEKMLASRDTPSYELDHLDQEKPESNASFDTIIDEKQANLRQPNDNPKSSEPQEKSNEESDSKANPSADSYEESGIVSFEAKNELDRLFEGKPVCVARNFMLPKTLKNKRSYPRSCLEPGCEYVAKTRRSMAGHYRRHYKPYKCQQCERRFPTATMLKTHIASGHMNSKKNICNICGKHFSEKSLLSQHMFTHQTVKLPRCQFCGKSFNYLSAWRRHINLFHNKRQQNMERSENDPKENNSCYEVTAESVTEKSLDSVDIKIETLDEELMTDEHPENTTEAALSDVRENNVDNHETSLSVADESVFSENTIENGEANLPVALNTSEPESAARGITVGSNEISVSAIHAIEALCIVLEYNFPAHLRESQTYPRPCEESDCDYVAKNAKLMRMHHQKHYKAFQCRKCDRLQSTIGSLRNHIERVHLKTRKFDHCQFCGQSFNSVSGWRQHVKKFHEQELENLKIAVLLEDTKEHLVHSGDDSVDTILEALDTQDTLDKIETMSVFLEYNFPMSLQQIETYPRSCEEPGCTHAAKNIRLMKIHYQYHYKPFQCRECSKRFSIKKLLRDHIEVHHLDTRIYDCAICHKIFKRKHNLQGHLFKHQDFETRKCVLCDASFSDAELLKSHIIEVHVGSTYDTPAVTATTTEKDTVKVEMNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-