Trut001000.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056647.1:15607251-15618126[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.5e-05 0.0051 18.8 1.8 1 23 203 225 203 225 0.98 2 18 2.6e-05 0.003 19.5 1.8 1 23 231 254 231 254 0.95 3 18 0.00011 0.013 17.5 0.6 2 23 267 289 266 289 0.96 4 18 0.35 40 6.6 0.4 1 22 346 367 346 369 0.89 5 18 0.0001 0.012 17.6 0.3 2 23 376 397 375 397 0.96 6 18 0.00045 0.052 15.6 2.2 1 23 403 426 403 426 0.97 7 18 0.062 7 8.9 2.8 1 23 438 461 438 461 0.98 8 18 0.0032 0.37 13.0 0.4 2 23 518 540 518 540 0.91 9 18 6.2e-05 0.0071 18.3 1.5 1 23 571 593 571 593 0.96 10 18 0.0042 0.48 12.6 2.8 1 23 599 622 599 622 0.97 11 18 0.0056 0.64 12.2 0.9 2 23 632 654 631 654 0.96 12 18 0.00011 0.012 17.6 6.8 1 23 838 860 838 860 0.97 13 18 0.00091 0.1 14.7 0.5 1 23 866 889 866 889 0.97 14 18 4.1 4.7e+02 3.2 0.7 1 10 900 909 900 923 0.76 15 18 0.00025 0.029 16.4 1.1 2 23 1035 1056 1034 1056 0.97 16 18 5.8e-07 6.7e-05 24.7 1.3 1 23 1084 1106 1084 1106 0.98 17 18 0.0015 0.18 14.0 0.3 1 23 1112 1135 1112 1135 0.95 18 18 0.13 15 7.9 3.4 1 23 1147 1170 1147 1170 0.95
Sequence Information
- Coding Sequence
- ATGGATGTTTCCCAGTCGCTCGGGGATGATTTGCTGGATGTTCCAAATGGCGATCCGGCAACGTATTGCAGGTTGTGCTTGTCCGATATCGACGTGGAAGAACTATTTCCCGATGGCCAGGGACCGCGACAAGAGCTAATTGAGCGCATTCATGAGTGCACCGGTATTTTGATCACCCTGGACGAGGACTATCCGTCGTCGGTATGTTGGATGTGTTCCCTCTCGTTGGAGGAGTTTCAGTGCTTTCGGGAGCGATGCCATCGTTACGATATTCTGATACGTCGGAAAAGGAAGGAGCTTTGTCTGGGTGGAACAATCGCTGCGGTGAACCATGGCTATGAAGTGGTTATGgaggatgacgatgatgatCCGGATCAGGACGATCCAGAAGGACCATTGCTTCGTATTTCCTCGATCCAGGAACGATTTGATGCGATCGAAGATGATTTGTCCAATGAAAGTTTGTTGGAACCTTCGTCCTATCAGCCAGTGGAGAGAGATATGAAACCAGATCAAGAAACGTTGACTGCTTACGCGGAGCATTTCAAAGCAGCCGGTAATGCATCCGCTGGGCGCGACACTAACCATGACGATCCTGAACGACCATTCAAGTGTACTCTCTGCACGCGAACCTTTAAAAATCGTGCGAACCTCTGGGAGCACAACCGACTCCACACGGGTTTGATGCCTTTTTCATGCAACGATTGTGGAACCACTTTCAGTAGGTATAAATCACTGATGGCGCATAAGGAAAAATATCATTCGAAGAACTCAACCGAGGATCCGCCGCTGAGACTGAAGTGCAACTTCTGTCCCCGTGTTTTCCCTCGTAAAGGAGATCGTACACAACACATGAAGATGGGTCATCCGGATCAGTATGATCCCAGCGAGAAAGCAGCTGGAGACACACCAACGCCTTCCCTTCCCCAGGAGAGATCGACCCCTTCAGCTAGGCGTGTTAGTGCGGCGACGTCCGAAAGCATTAGCGTGAAAAAAGCAAACCCAAGTCCCGTGACGAACTCTGTGGTGGCGCGCTTCTGCTGTAATATGTGCCTAAGCAGTTTCGAGACGGCTGAACTTCTGGAGGAGCATGTAGGATTAATGCACCCGAAAGATGGCATATTGACTTGTCCGTACTGTCCCAAGACCTTTAAAGCGAGACCAACTCTACGCATGCATATACTCAATCACCAGGGCAAACTTCCGTACAAATGTGACGACTGTGGCTCGCGCTTCGATCGCAGATTCTATCTCGTGAAGCATCGGGAACGGTACCATACGGGAGAAAACCGTAAAGTTATCCACTGTCGGTTCCGATGTAAGTTCTGTCCTCGTCTGTTTCAGCGTAAGATCGATCGCAAAACGCATACCCGCATGGTGCACTCGAAGGAGATCCGAGTAAAAAAGGAGAAGGTCGATCAAATTCTGAACGATACTCGAACAAAGGaagatgacgatgacgatgaagAGGAGGAGCAAGTAGTGGTGGTGAAACGTGAAAAATCACCAGTTCCGAAAATGAGGAAGTCTCTTCCTGCGAATCCCAGCAATGAATGCGTCCATTGTGGAGAACACTTTCCAACCGCAGCTATGCTCCGCGAACATATTGATGACCAGCATCTGAAAAAGGGGAAGGATGTGAAGCCTGTGCTTTCGAAGGTGGCGAAGAAAACAAATTCAGCCAAAACGACACTGAGCGCAAAACGTCCCTACAAGTGTCCGTATTGTCCGAAAACGTTCACACAGAATTATGTCATGAAGGAACACACGTTCATCCACACCGGATCGCTACGTTACCGATGCGACGAGTGCTTGGCCATGTTCAATCGTCCCCACTACCTGCGGCAACACAAGCTCAAATATCATTCCTTGAACTCCAATTTTCGGGCGCTTAAGTGCCGTTTCTGTTCGCGAAGTTTCGTCCGCAAGCAGGACATCAAAATCCATGAGAGGATCGCTCATGATGTAATCGATGAGAGCGAGCCCGCGGAGCGAGAAATTCTGGACGATAGTTTCAACGGGAGCGCAGATAATACGCTTGACTATGAGGGCGGAAGTAAAGACGGGGGCAAACGTGACCGTATCACCGGTTACCGGAAAAAGACGGAGGTTGGAAGAAAGGATCCGGTGGAAGATGATGACATTGAGGAAATTGATGATGAGAACGATGAGGACTATGTGGTAGATGACGACGAATACGATGAGGAGGAAGGAGATGATGGGGCGAGCGAGATCGACGGGgacgatgacgatgaggacAATGGTGGCATCACTGATAATGGAACCGAGGATAATAGAATATCAAACTCGGCTGAGGATCCGGAAATTCGTGACGTGGTGGTAACGCTGGAGCGCATCCCTCAGGACGTTTTGCAATCTTTGGACAACTCCAACGAGGACGATTGCGCGGAGTCCAATGCTGAGTCGAACGACAACGACGGAGAGGACGATGACCAGTCTACAAGCGATCGATCGGCGGGAAAACCACGGCTCAATGTCGGCATAACACTGCACCGCTGTCCGAAGTGTTTCAAGGTGTTCAAGACACGCAAATCGTTGAATCATCACATGATCTACCACCAGAGTCAGTTGCCGTTTTCGTGCGATGAATGCGGGGTGCAGTTCGCCCGCAATCGGCCGCTTCAGGTGCACAAAAAGCGCTACCACTCGGAAGATGCTCCCTACGTTGGTCAGCGATTCAGTTGCGATTACTGTCCGAGAATCTTTCTTCGCGATCGGGACAAGATCTTTCACCAGAGAACCGTACACATCATGGAGCGGAATGTGCTCCGCGATGAAGGCACACCGGAAttgaaaaaagcaaaaataaaaagaCGAATGGATTTCGTTTGTATCGTTTGTTGTCAGCGCTTCCTGACAGAGAAGACCTGCCAGCGTCACATTAATGATTTTCATCCCGCGGAAGCATTGCCCAAAAGTTCTACACCAGTGTCAACTGAGCTAGCAACTCCGAAAATGGACCCAGACATGGAACAACTCGAGGACCCTAAGCAGACCATTTCGCCACTTCCAGCGTCGACACCGCCACAGCCGCCACCACTATCGCTTTTTAATGCCGGCGTGAAACCGTACAGACTGTGTCGCTGCACAACGTGTGTGGCAATCTTCAAAGACCAAGACAACTGGACAGCCCACATCAGGACTCACTCGAATGTACGTCCGCATCACTGTGAGCCATGTCTACTGAAACGAAAAAGTCGTACGAACCGCAAAATAACCTCAGTTGGCTTCAAGTGCCAGTACTGTCCGAAGGTATTCAACAAAGCGAGTTCTTTGCGTGTGCATCAACGGCTGCACACCTCGGAACTGCGTTTCCCCTGCGATGAGTGCGGCATGATGTACGATCGCTACCGATTGCTGCAGGCCCACAAGGAACGCTACCACTCCGAGGACGCGATGCAGACTCCTCTGGAAACCTTCCGTTGTGTGTACTGTCCGAGGACCTTCATGCGGCAGCGTGACTGCAACTATCACCAGGAATCGGTGCATGCGATGTGA
- Protein Sequence
- MDVSQSLGDDLLDVPNGDPATYCRLCLSDIDVEELFPDGQGPRQELIERIHECTGILITLDEDYPSSVCWMCSLSLEEFQCFRERCHRYDILIRRKRKELCLGGTIAAVNHGYEVVMEDDDDDPDQDDPEGPLLRISSIQERFDAIEDDLSNESLLEPSSYQPVERDMKPDQETLTAYAEHFKAAGNASAGRDTNHDDPERPFKCTLCTRTFKNRANLWEHNRLHTGLMPFSCNDCGTTFSRYKSLMAHKEKYHSKNSTEDPPLRLKCNFCPRVFPRKGDRTQHMKMGHPDQYDPSEKAAGDTPTPSLPQERSTPSARRVSAATSESISVKKANPSPVTNSVVARFCCNMCLSSFETAELLEEHVGLMHPKDGILTCPYCPKTFKARPTLRMHILNHQGKLPYKCDDCGSRFDRRFYLVKHRERYHTGENRKVIHCRFRCKFCPRLFQRKIDRKTHTRMVHSKEIRVKKEKVDQILNDTRTKEDDDDDEEEEQVVVVKREKSPVPKMRKSLPANPSNECVHCGEHFPTAAMLREHIDDQHLKKGKDVKPVLSKVAKKTNSAKTTLSAKRPYKCPYCPKTFTQNYVMKEHTFIHTGSLRYRCDECLAMFNRPHYLRQHKLKYHSLNSNFRALKCRFCSRSFVRKQDIKIHERIAHDVIDESEPAEREILDDSFNGSADNTLDYEGGSKDGGKRDRITGYRKKTEVGRKDPVEDDDIEEIDDENDEDYVVDDDEYDEEEGDDGASEIDGDDDDEDNGGITDNGTEDNRISNSAEDPEIRDVVVTLERIPQDVLQSLDNSNEDDCAESNAESNDNDGEDDDQSTSDRSAGKPRLNVGITLHRCPKCFKVFKTRKSLNHHMIYHQSQLPFSCDECGVQFARNRPLQVHKKRYHSEDAPYVGQRFSCDYCPRIFLRDRDKIFHQRTVHIMERNVLRDEGTPELKKAKIKRRMDFVCIVCCQRFLTEKTCQRHINDFHPAEALPKSSTPVSTELATPKMDPDMEQLEDPKQTISPLPASTPPQPPPLSLFNAGVKPYRLCRCTTCVAIFKDQDNWTAHIRTHSNVRPHHCEPCLLKRKSRTNRKITSVGFKCQYCPKVFNKASSLRVHQRLHTSELRFPCDECGMMYDRYRLLQAHKERYHSEDAMQTPLETFRCVYCPRTFMRQRDCNYHQESVHAM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -