Trut018431.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056648.1:106166489-106176611[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.077 8.7 8.6 3.4 1 23 247 270 247 270 0.91 2 22 0.00021 0.024 16.7 3.2 1 23 276 298 276 298 0.99 3 22 0.023 2.6 10.3 1.1 1 23 349 371 349 371 0.98 4 22 0.00038 0.044 15.9 2.6 1 23 378 400 378 400 0.98 5 22 1.6e-05 0.0019 20.2 1.2 1 23 412 434 412 434 0.99 6 22 3e-05 0.0034 19.3 0.9 1 23 462 484 462 484 0.97 7 22 0.00075 0.085 15.0 1.8 1 23 498 520 498 520 0.99 8 22 0.0064 0.73 12.0 4.1 2 23 562 583 561 584 0.94 9 22 0.0034 0.39 12.9 5.6 1 23 590 612 590 613 0.95 10 22 0.0041 0.46 12.6 2.9 1 23 641 663 641 663 0.99 11 22 0.02 2.3 10.5 0.2 1 23 735 757 735 757 0.98 12 22 0.001 0.12 14.5 7.5 1 23 789 811 789 812 0.94 13 22 0.00024 0.028 16.5 6.6 1 23 818 840 818 840 0.98 14 22 0.049 5.6 9.2 0.2 2 23 904 925 903 925 0.97 15 22 0.011 1.2 11.3 7.6 2 23 950 971 950 972 0.95 16 22 0.007 0.8 11.9 2.1 1 23 978 1001 978 1001 0.94 17 22 7.9e-06 0.0009 21.2 0.4 1 23 1032 1054 1032 1054 0.99 18 22 0.0029 0.34 13.1 2.3 2 23 1077 1098 1076 1098 0.97 19 22 0.069 7.9 8.8 4.0 2 23 1199 1220 1198 1221 0.94 20 22 0.00019 0.021 16.8 2.7 1 23 1227 1250 1227 1250 0.97 21 22 0.0016 0.19 13.9 0.6 1 23 1264 1287 1264 1287 0.95 22 22 0.014 1.7 10.9 0.4 1 23 1293 1315 1293 1315 0.96
Sequence Information
- Coding Sequence
- ATGATGCAAAATCAAAAACCAACAACATCCGCCACTACCACCGCCAGTAGTAAAAGTAGCAACATTAACACAACAAATGATAGACAGGGGGAGATTGGAGGCGGTGAAGGTGGCTGTAATGGTAGAGTAGGAGATTCTGGAGGCATCACTGCTCTACAAACCTTAAGCGCGTTATGCCGGGTTTGCATGTGTAATCCTCAACAGGGGGAGGACGGAAAATATCTGGAATCATTGTACCGCACAACAGTCGAATCAAAAACATTGCATTCGATGCTGGTCACTGTTTGCAGTCCGCTGGCTCAGGGAAGTAATGAAGGAATGCCGGATAAAATATGTACACTGTGTAAGGCAAAGGTCGTTCAGGCGTATAAGTTGTACGAAATGTGTATTAAAAGTGATGAAAGAATAAGGAAACTTATGCAAACACAACAGACAACAGGAGGTGTATTAATAAAGCAGGAGATTATTGATGATGAAAATGACGTAGCAAACGCTGATCTCTATTACGATCCCCAAGTCAAGAAGGAAGACGCATACGACTATGAGTACCCTTTCGAAGGACACTTTTATGGGCCATCTTTGGCTTCAGTGGCTTACAGCACACCTAACTTGAGAATCCAATCAGTACGCAATGGGCCGGAAGTACTGGTGCAGTTCCAAAATCAAAAAACTCTGGTTGATGCTGCTCCAAAACCTGTTCTTGAGTTTGAAAAGTTTGTGAAGGTTACTTCCAAAGGACACCAATGTACACTTTGTGAAAGGGACTTCAAGTACTTCAGCTACTTCAAACAGCATGCTCTTGCCCAACACGATCCTACGAAACCGTATAAGTGCGATCAGTGCAAGTATACTTTTAAAACTGAACAACGTCTATTACTGCACATGAAAACTCACATTGACGTGGAGGATCTTCCACTGGCTGTAGAACTTACAGACGCAAAGCCTAAACAGGAACCCGATCTTGATCAATCCGAAGATCCACTTAGCGAGGAAGACTTAAATGAGGTAAATATATCAATCAGCCCAGACACCGGTGAAAAAGTATACAAATGTCTCGTCTGCCAGAAACAACTGTCCACATTGCCGCTCTACAGACGCCACCGAACCGTTCACACCGTTCACGGGCGTCCGTATGAATGTAATATTTGTCATTATCGGTTTGCCATGAAATTCAGCTACAATGCCCACATGCAACTTCACGAGGAAGGCAAGGATCCAGCGCAACCGCTTATTTATAAATGTACCGAATGCAGCGAAACATTTCCCCGGCGGAAACTTCTCAATTTACACATGTCTTCTCATCCAGAAAAACCTCATGTTTCACTGAACAAAACAGCTCCTGCAGCTATCCTAGCGAGCAGTATTTCTTCGGGACGTCACGGCCACGTTTGTCCTATCTGTTCCGAAACATTCAATCGTGAATCGGTTCTCAACAACCATATGAAGCAGCATGAACTCGAAGCTGCTCAACTGAAGCATTCTGAGATTTGTTATGTTTGCACGCTCTGTGGGTTGGAGTGTGACACTCGCGAAACATTTACGAATCACATTAAAACCCATGGTGATGTGCAGTTCCCTACCGAAAACGATCCAGCCGTAGATACGGAAGTAAGTGATGATGAGCATGCACAGAATGGCGAAGATCCGCTGAGCATCGTAAAGGTGGAACCGAAAAGTGGACTCAAGTGTGAACTGTGCTTTAAGACATTCCCCTATGCGTGCAACCTAAAACAGCACAAGATAATTCATCACTCGGAAATGAAGCCCCACGAATGCAATGTCTGTCATTATAGATTCGAATACGAAGGTACACTTCTGCGGCATATACAGAAGCATCATTCCAAACCGGAAACAAATGTTATAGCCGCACCGACTGTCACCGATGAGGCAATCTCCGCTCCGCGGGGAGCAAGCATTATCTATAAATGTAAACTATGCTCCGCTCGTTTCCAAAAGCAAAAATCGATGACTTGGCATTTGAAAACACATCGGTCGATTGTGGCCAGCGAGGGCAGCAGTGTACAGGAGCTGGAACAAAGCCTGAACATTCCGGCGTCGTCAACATTACCCCCCAAAGCGCTTCTACGACAACCATCGCCTGCCCCAACGCCAACTCCTCCGCCGGCATCTGCATCGCAAAAATCTCCTCTTCTACAGCCCAAAGTGGAAGGAAACAAGGCCTCCGCCAATTCGACGAATGTGTACAAATGTGGGTACTGTCCCCAGAATCTCGATTCAGAGGATGCCTACTATCAACATATGAAAGGTCACCGTGTTCGTTCCAACGCGTCGGATCCACTGCAGCCAGACGATGAAACACCTCCGCTCAAGAAGAAACGAGCCTGGGTGCGTTCCGGTGAGCACCACCGGTGTAACCTTTGCCACAAAGTGTTCACCTTCCGCAGTCAGTTGCAGCAGCACACGGCTCTCCATCATCAGCCCGGGAAACCGTACGAATGTAAAAAGTGTCACTACAGCTTTGTACACAAGTTGAATCTCAAGAGACACGAACTGACACACTTGGAAGAGGAACGCCTTGCCAGTGAGGACGATCAGTCGGTACAGCTGCTGGAGGACGAAAGCTTCAACGCTGATTTGGAAGATTTTGTGGAACCAGTGCTTGAGGAGGCAGACCCTGCCGCTACAAATCGGAGTTCCGAAAGCGGCGAAGGCAGTCAATCGGGCGACGGTGCAGTACCAAAGAAAAATAAATGCGTCGTCTGTTCTGCCCTATTTCAGCGGGAAGATCAACTGATCGAACACCTTAAAACACATATTGAGCGCATTAAAGTGACCAAGCAGGAAACACAGAATGCGCGAAAAATACTCACAGATGATAATGATCGGAAGTGCAAGCTGTGCACTAAAGTCTTCAAGTACACCTGCCAGCTGAAACAGCACCTTCAAATGCATCACTCCAAAGATAAACCGTTCGAGTGTAACATTTGCAGATATCGGTTTGAGTTCAAAGGTCACATGATACGACACAAAGCAATAAATCATACCGATGAAGTTGCTGCCGAAGAAGCGGAAATGGAAGATCTTCCATCTAAAATCTCCACACCTTCAATCCACCCAGATGGTTCCGAGATATACCAGTGTCCGGTTTGTCCGATGAACTTCGTGAAACAGCGATCCCTAACGTGGCATTTAAAAACTCACGCTAACAGGAAGATTAAGCGAGAAAAGGATGATGAGTATCCTTCCACTTCGACTGGAGAGGTCATGCAATGTCGTTTCTGTTCGTGTACCTTCCGCGATGTGTACGAACTCAAAGCCCATATGGTAACTCATATCGGAGGCTCGTCTGTAGCGCCAGGCGAGGGCGAGCACTCTCTTTTCGGTTCTGGGTTGGACATGATGCTGCAGGATTTTCCCGATAGCATGGAAAATCATGCAGCCGATCCACTGTTTGACGAATCCAACCTGGAACTGGTGCTCGAGGATGGGTTCGATAATGATCTTGATTTCAATATGGACTATCACGATACACCTCCGCTGCCGCCAGCAAAGAAAAGTCTTCCGGCGAATGAGAATTCAATCTACGATGTCGCCGAACCGGGAACATCGACTACACCGGCGAAGGGCAAAATCGTGTGTGAACTTTGCAAAAAAGATTTCCTATACTCCTGCAATCTAAAACAGCATATGCAGCTGCATCACGCTAAGGAGAAACCATTCGAGTGCAAGATCTGTTTTTATAGGTTCGAATACAGTGGTCACCTGGTGCGACATATTCGTCAGAATCACGATGTTGACGAAACAACAGGTGAAGCCGCTGAACGGAACTTCGTGTGTACCTTTTGCTCGGAGCTGTTTGAGCAAAAatCCCAGCTAAACGCTCACGTTCAGTTGTATCACAAAGGAGAGAAACAGTTCAAGTGTGAGCTATGTCCTGCCTCTTTCGCCTACAAGAAAACGTATGACGCTCATCGGGAAGAACATCAGTCGAATAAACGTTCAGataCTGCACCAACAACCAGTGCCCAAAGTACAACGGCAAGTGCTGCTCCCGTGAGTTACTCCTGTAATTTCTGCAAAAAGACGTAA
- Protein Sequence
- MMQNQKPTTSATTTASSKSSNINTTNDRQGEIGGGEGGCNGRVGDSGGITALQTLSALCRVCMCNPQQGEDGKYLESLYRTTVESKTLHSMLVTVCSPLAQGSNEGMPDKICTLCKAKVVQAYKLYEMCIKSDERIRKLMQTQQTTGGVLIKQEIIDDENDVANADLYYDPQVKKEDAYDYEYPFEGHFYGPSLASVAYSTPNLRIQSVRNGPEVLVQFQNQKTLVDAAPKPVLEFEKFVKVTSKGHQCTLCERDFKYFSYFKQHALAQHDPTKPYKCDQCKYTFKTEQRLLLHMKTHIDVEDLPLAVELTDAKPKQEPDLDQSEDPLSEEDLNEVNISISPDTGEKVYKCLVCQKQLSTLPLYRRHRTVHTVHGRPYECNICHYRFAMKFSYNAHMQLHEEGKDPAQPLIYKCTECSETFPRRKLLNLHMSSHPEKPHVSLNKTAPAAILASSISSGRHGHVCPICSETFNRESVLNNHMKQHELEAAQLKHSEICYVCTLCGLECDTRETFTNHIKTHGDVQFPTENDPAVDTEVSDDEHAQNGEDPLSIVKVEPKSGLKCELCFKTFPYACNLKQHKIIHHSEMKPHECNVCHYRFEYEGTLLRHIQKHHSKPETNVIAAPTVTDEAISAPRGASIIYKCKLCSARFQKQKSMTWHLKTHRSIVASEGSSVQELEQSLNIPASSTLPPKALLRQPSPAPTPTPPPASASQKSPLLQPKVEGNKASANSTNVYKCGYCPQNLDSEDAYYQHMKGHRVRSNASDPLQPDDETPPLKKKRAWVRSGEHHRCNLCHKVFTFRSQLQQHTALHHQPGKPYECKKCHYSFVHKLNLKRHELTHLEEERLASEDDQSVQLLEDESFNADLEDFVEPVLEEADPAATNRSSESGEGSQSGDGAVPKKNKCVVCSALFQREDQLIEHLKTHIERIKVTKQETQNARKILTDDNDRKCKLCTKVFKYTCQLKQHLQMHHSKDKPFECNICRYRFEFKGHMIRHKAINHTDEVAAEEAEMEDLPSKISTPSIHPDGSEIYQCPVCPMNFVKQRSLTWHLKTHANRKIKREKDDEYPSTSTGEVMQCRFCSCTFRDVYELKAHMVTHIGGSSVAPGEGEHSLFGSGLDMMLQDFPDSMENHAADPLFDESNLELVLEDGFDNDLDFNMDYHDTPPLPPAKKSLPANENSIYDVAEPGTSTTPAKGKIVCELCKKDFLYSCNLKQHMQLHHAKEKPFECKICFYRFEYSGHLVRHIRQNHDVDETTGEAAERNFVCTFCSELFEQKSQLNAHVQLYHKGEKQFKCELCPASFAYKKTYDAHREEHQSNKRSDTAPTTSAQSTTASAAPVSYSCNFCKKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -