Trut033676.1
Basic Information
- Insect
- Toxorhynchites rutilus
- Gene Symbol
- -
- Assembly
- GCA_029784135.1
- Location
- CM056649.1:21534893-21550365[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00031 0.036 16.1 0.9 1 21 111 131 111 132 0.95 2 17 1.4 1.6e+02 4.7 0.3 2 13 165 176 164 178 0.88 3 17 1.2e-05 0.0014 20.6 3.8 1 23 374 397 374 397 0.96 4 17 5.4e-06 0.00062 21.7 0.4 2 23 404 425 403 425 0.98 5 17 5.6e-06 0.00064 21.6 0.4 1 23 431 453 431 453 0.98 6 17 5.3e-05 0.0061 18.6 0.7 2 23 460 481 459 481 0.96 7 17 1e-06 0.00012 23.9 4.1 1 23 487 509 487 509 0.99 8 17 7.1e-05 0.0081 18.2 0.2 1 23 553 575 553 575 0.98 9 17 1e-05 0.0012 20.8 2.5 2 23 582 603 581 603 0.98 10 17 1.1e-05 0.0013 20.7 0.7 1 23 609 631 609 631 0.98 11 17 3.6e-05 0.0041 19.1 0.1 2 23 637 658 636 658 0.97 12 17 1.2e-06 0.00014 23.7 1.7 1 23 664 686 664 686 0.99 13 17 8.6e-07 9.8e-05 24.2 1.4 1 23 752 774 752 774 0.99 14 17 8.1e-07 9.3e-05 24.3 1.0 1 23 780 802 780 802 0.99 15 17 5.9e-05 0.0067 18.4 0.7 1 23 808 833 808 833 0.98 16 17 2.7e-05 0.0031 19.5 0.1 2 23 839 860 838 860 0.97 17 17 3.5e-06 0.0004 22.3 0.8 1 23 866 888 866 888 0.98
Sequence Information
- Coding Sequence
- ATGACGTCGGAGGTGAAATGTGATTATCAGAAAAGTGAGGACTATATTTTGACTGTGACTAAACCATCCGATGGAGCAAACCGGTACGATCCGACAATAACGACAACGGCGACGATGAGCGCGGCAAGCGATTATGTAAAACAGGCGGTTGTGCCCCAAGTGGCAACGATGGCGCCAGAGCAACCACCAAAAACCCTCATCTCCCAAATTgcccagcagcaacagcagcagcagtccTGCAAGTGTGAATTCTGCGAATATCTCCAGGCAAATCGGATCAGTTTAAGTGGTTCCGGCGGGTCGGGAACGGTGGTTGGGGAAGACCACGTGTTCCAGTGCGAGTTCTGCGGGGAAGGATTCGCGAACCAGGGCAGCTTCAATCGGCACCGGTGTGGCAGCACCGATATCCAGGTGTACCGGTGTGAATCCTGCCGGCGGGAATACGGGACGTCCAGAACTGAATCGAACATCAATGGGTTCGAGGGAAGGGGGAAATGTGATATCTGCAATAAAAACTATGTGCAATCAACGACAGGGGAAACGGGGGGAATGACACTTTATGGGCAGGTCGGACACCCTGCTCTGGCGGAAGCCAACAGCTACGCAACAGCCAAGGCTTCCGTCGTAGACAGTCCAATGGAACATGACCTCAGCAGTATTGAACCGTTCGGATCGGAGAGCGAATGTATTAGCGAATTGTTAACAGAGGGTCCTTCTGCGGTGGAGTCCCATGCAATGACCCTTCCTGGGAAGACCTATTTCGTGCTGGGGAACGTGGAGTTGCAGCAGATGAACATCGGGATTACCAGCGGTGTTCAGAATGCGAAAATAAGCAGTGAATCGAACGTGACGAGCTTGCATCAGTACGACCAGTACGAGGACGAAGACTACTCATCCATGTCAGAAGATGAAGCTATTGTTCCAATAGAACCCTATGCCAAATCCCCGAAACAGGAACAAGCCAAAACCGAGTTGCCAATCCAGGAGACGATCATTGACACCAGCAGTAACGTTGGTCTTCCGTTCAGTGCGTCCACTGCTTCCGGCGCCCCTACGGAGGAGGAAGGCAAATGTGACTCGTCCAGTAAGGGTACTGATCCGGTACAACCAGATCGACCGTTCAAATGTCACATCTGCGAGCGGTCCTATCGCAACCACAAGAATTTGAAGGCCCACATCAAGGGAGCACACGAGGGCATCCGGGCAAATCAGTGCGAGATTTGTGGAAAGAACTTCTCCGGCAGCAGTTATCTGGTTATCCACCGGCGAAGGCATACGGGTGAACGACCCTTCAAGTGTACCACCTGTGGAAAGGCCTTCGTAGATAGCCGGGCGCTGTCGGTGCATACCCGGCTGCATACGCCCGGCAATCGGTTGAAGTGTATGAAGTGTGAAAAAACTTTCTCTAGCGCTTCCGCGCTAACAGTGCACAACCGTTTGCATACCGGGATTCATCCGTATAAATGTGAAATATGCGAGAAGACCTTCCCCCAGTACAACAACCTCAAGCATCATATGAAGAAACACGAAGCGGCGACGGAACAattgcagcagcagcaacaacaacagcaacaaaccTCATCACTCGAGGCGAGTTCCAGCCCGAACAGCAACAGCAGTAGTGTCGGTAGCAGTAGCTGCTCCCCGCATCTCGAGTACAAATGCAACGTTTGCGGTAAACCGTCCGGATCCTCTGAGGAACTGCAGACGCATCTGAACCAGCACTGTAAGGATCGGCCGAATCAATGCGAGTTTTGCTCGAAGGTTTTCCCCCGATCATCCCACCTCATCATACACCGACGGAGACATACGGGTGAGCGGCCGTTCAAATGTAAATACTGTGAAAAGGCCTTCGTTGATTCACGTGCCCTTTCCGTACATACGAGACTGCACACGGGAGAAAGGGTCACCTGCGACATCTGCTTGAAAACGTTCGCCAGCAGTTCCGGTCTGATTGTTCACCGCCGAATCCACCTTGGGATCCATCCGTACAAGTGCGACTACTGCCCGAAATCCTTCGCCCAATCGACCGCCCTCAAGTATCATCTCAAGAAGCACGACACCACGAGTCTGCCTACGACAACCGACGGTTCCGATGGCTCGGGCCGCTCGAAAATATCTAGCCAACACAACGACGCAAGCTTGCTCTCGGACCATTCCTCTGACCAATCTAATCCTCCGACAGCAGGCAGTCCCGAACCTGCTCAACTAGCGCCACATTCCGACCAGCAAGCAAAAGGCACCTCCGATCACTTCAAGTGCCAAGTATGCAACAAGATCTTCCGATCGGCAGAATATTTGGCACGACATCGGAGGACCCACTCGGGCGAGCGACCTTTTCAGTGTGAGATTTGTGGCAAAAACTTCAGCACTATGAGCTACCTGGTAATTCACCGCCGACGCCACACCTCGGAACGACCGTACAAATGTCCACACGGGGGATGCACGAAGGCTTTTGTGGACAGCCGTGCACTGCAGAAACACAGCCGATCGGTGCACTCGAAGATCCGCGTTCCCTGCGAATTCTGCCCCAAAACATACTCTAGTGTAAGCAATCTGATCGTCCACCGACGGATCCACAGTGGCGTCCACCCGTTCGAGTGTGACATTTGTGGACGATCGTTCGCCCAAAAGAACACCCTCAAATATCACCTAAACCAGCACGTCGGCAAGCATGACGGCTCAAATCAGAATCTGTAA
- Protein Sequence
- MTSEVKCDYQKSEDYILTVTKPSDGANRYDPTITTTATMSAASDYVKQAVVPQVATMAPEQPPKTLISQIAQQQQQQQSCKCEFCEYLQANRISLSGSGGSGTVVGEDHVFQCEFCGEGFANQGSFNRHRCGSTDIQVYRCESCRREYGTSRTESNINGFEGRGKCDICNKNYVQSTTGETGGMTLYGQVGHPALAEANSYATAKASVVDSPMEHDLSSIEPFGSESECISELLTEGPSAVESHAMTLPGKTYFVLGNVELQQMNIGITSGVQNAKISSESNVTSLHQYDQYEDEDYSSMSEDEAIVPIEPYAKSPKQEQAKTELPIQETIIDTSSNVGLPFSASTASGAPTEEEGKCDSSSKGTDPVQPDRPFKCHICERSYRNHKNLKAHIKGAHEGIRANQCEICGKNFSGSSYLVIHRRRHTGERPFKCTTCGKAFVDSRALSVHTRLHTPGNRLKCMKCEKTFSSASALTVHNRLHTGIHPYKCEICEKTFPQYNNLKHHMKKHEAATEQLQQQQQQQQQTSSLEASSSPNSNSSSVGSSSCSPHLEYKCNVCGKPSGSSEELQTHLNQHCKDRPNQCEFCSKVFPRSSHLIIHRRRHTGERPFKCKYCEKAFVDSRALSVHTRLHTGERVTCDICLKTFASSSGLIVHRRIHLGIHPYKCDYCPKSFAQSTALKYHLKKHDTTSLPTTTDGSDGSGRSKISSQHNDASLLSDHSSDQSNPPTAGSPEPAQLAPHSDQQAKGTSDHFKCQVCNKIFRSAEYLARHRRTHSGERPFQCEICGKNFSTMSYLVIHRRRHTSERPYKCPHGGCTKAFVDSRALQKHSRSVHSKIRVPCEFCPKTYSSVSNLIVHRRIHSGVHPFECDICGRSFAQKNTLKYHLNQHVGKHDGSNQNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -