Basic Information

Gene Symbol
stc
Assembly
GCA_963691655.1
Location
OY829329.1:18051584-18061290[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 2 2.8e+04 -4.4 1.6 15 19 616 620 615 620 0.81
2 12 0.21 2.9e+03 -1.0 0.3 4 10 649 655 648 656 0.94
3 12 2.1e-06 0.03 15.0 15.8 3 19 662 678 655 678 0.87
4 12 8.5e-07 0.012 16.3 10.2 3 18 716 731 714 732 0.93
5 12 7.2e-05 1 10.1 21.0 1 19 772 790 762 790 0.93
6 12 7.4e-05 1 10.1 16.3 4 18 838 852 831 853 0.86
7 12 0.037 5.2e+02 1.4 11.6 1 11 893 903 893 914 0.94
8 12 5.9e-10 8.3e-06 26.4 15.5 1 18 920 937 920 938 0.97
9 12 2 2.8e+04 -11.8 14.3 9 18 984 994 971 995 0.72
10 12 8.2e-07 0.012 16.3 12.4 1 16 1031 1046 1031 1056 0.91
11 12 4.1e-05 0.58 10.9 12.7 1 19 1063 1082 1063 1082 0.96
12 12 0.68 9.7e+03 -2.6 0.7 7 12 1097 1102 1091 1102 0.68

Sequence Information

Coding Sequence
ATGTCGGCAGACTCACAATCAACGCATAATACACAAACGTCATTTTCATTGGCGCAACTTTGGCAAGGATTTAGTGACATTGCCAACGCAGTTGCAGAAGGAGGAGGCGCAAACAACGCAACTGCCGGGACATCAATTTCCAACAACGATTCAGGCTCAATGATTAATGACGCTGGTGGTGAGACATCATACACCAATAATATCATCGGCAGCATTTTAAATAATCAAACATttcggcaacaacaacagcaacaatcaacgaataacagtaacaacaacaattacgtGAATTTCAATCAATTCATCATGCAACATAATTTACTCGGTGGTGGTGGAGGTAGTGGTGGCAATGGTTCTAGTGGTTTAGGTAGATCTAATACCTCTATGCCATCTACATCAGTTCCAGCATTCAATGGAACCATCGGTGATATTGGTGGTGATAACGGCGGCTATATGAATTTTGCACAAACTTCCGGTAATAATGAAACTTCTTCCTCCAATGTCATGGATAACTTTCAACAGCCATCAAATtatataaatcaaaattccaATCTATTTACATACAATGACTTGTactcatcaacaacagcaaataatgGCACGAATAATtacaacaatacaacaacaacgggCCTTAATAATTACTACGATAACGTCTATACACCATTTGGTAATACAGGCACAACATATTTTGCGAATCCATTTGCGACAGGATTCGATTTTAATGCATCTAATTTACAAGCGACAGCACCAGAATTTGTACCACGTTTTAATAACTTAACATTAGATGAAAATATCAATAAGATAAATGGTGatgttacaacaaaaacaacgactAATAAAACTTCAacacaacatcagcaacagttGAAAGATAATATGAATTTTGAACAATTCTTAAATAATACAGAAACAACGGCAGCGCAAATTGATGAAAAGAGTAAAACTGGTGAAGGTagtggcggtggtggtgttGATGGCACAACATCTggtaattttattatgaataatgGTCTTGAAAAGtccccaacaacaacaacaacacaacaaacgAAATCACAGCAAAAGTATaagaataataatgaaaataataaacaacGTTACAATGGTGGAGGAGGTGGAGGAGGGGATAGAGAAAATTTTCCCTCGAAAACTGGATCATGGCGAAGCAATAATGATAATAACACTTCTTCTTCATATAATTCACCTACCAAtactggtggtggtggtggtggtggtggtagcaATTCTGGTATGGGACGTTCAACTGGCGCTACTAATAGAACTTCAATACGTTCTGATTCACGTTCTTCTTCAACTAATGGCTTTTCTAATAATCCTGGTGGTTATCATGGTGGATCGGCAGCACAACATtcttcttcaaataataataacggtGGTGGTGGCAATGGCGGGGGAGAGAAATTTGCTTCCGGACGCGCTGAACGCGAACGTGATCGCGATAATCGACGCTATCAGAATGGACGTCGGTCGGTCGATTATCACCGTAGCAATAAACGTCGTGACGATTGGAATCGTAATCGTGATCGTGTTAATGGTTTTCgtgttgaagaaaaatattccacTGATAATGGCAAAGATAGTCCGTTACCATCGCCCGAAAAGAAACCTTCGCCAAAGAAAATCTATCCGGAAAATGAGAAGCTATCGCAACGTGAAAAACTCATACGTGATATTGAGATACGTCGTCTCGAGTGTCTCGTGTGTGTTGAACCCATAAAGTTTCACCATTCGGCTTGGTCATGTAACAATTGCTATCATATCTTGCATTTACAGTGTATCATTAAATGGGCATCCTCATCGAAATCGGATGATGGTTGGCGTTGCCCCGCCTGTCAGAATGTGGTTAAGGAAGTGCCACGCGATTATTACTGCTTCTGTGGCAAGGTTAAAAATCCCACATACAATCGTCAAGATATAGCACATTCGTGCGGTGATGTATGTGGGCGTGTTGAAGGTTGTGCACACGCATGCACGCTACTCTGCCATCCCGGACCCTGTCCTCCGTGTCAGGCAAATGTTAAACGTGAATGTGGTTGTGGCAAAACTACCAAATTGATGCAATGTTGCCTCAAGGAATCCATCGAATGTGATTTTACATGCGAAAAGTTGCTCAATTGTGAGTTGCACAAATGTAGCGCCAAGTGTCACGATGGCAAATGTGCGCCGTGCATTGAGAAGGTTGATCAGACATGTCATTGTTCCAAGCAGGAGCGGCAGGTTGCGTGTACACGCGATTCCCATGACAAGCACACATATTCGTGTGGAAAGCCGTGCGGTAAAGATTTGTCGTGTACTAATCACAAATGCAAGGATTGCTGTCATGCGGGCGAGTGTCGCCCGTGTAAGTTGAGCCCAGAGGCTGTGACCTCGTGTCCGTGCGGAAAGATGCCGGTAGTGCAGGGGCAGCGTAACTCCTGTCTCGATGCCATACCCGTTTGTGAGGGTGTATGCGGAAAGACTTTGCGTTGCGGAAAAGCAGCTCATCCCCATCACTGCACTAGCAAATGCCACTTGGGCAATTGCCCACCATGCAACAAGCAAACTGCCGTCAAGTGTCGCTGTGGTCACATGGACCAAATGATTAAGTGTCGACAGCTATCGACACGCGCTGATGATGCGCGCTGTAAAAAACGTTGCGTTAAGAAACGCTCATGTGGCAAACATAAATGCAATCAAGAATGTTGCATTGAGATTGACCACATTTGCCCACTGCCTTGCAACTATACGCTATCATGTGGCAAGCATAAATGCGATCAACCCTGCCATCGTGGTAATTGCCCACCATGTTATCGGTCATCTTTCGAAGAGCTCTACTGTGAATGTGGAGCTGAAGTTATCTATCCGCCAGTACCATGTGGCACTAAGAAACCGATCTGCAAGCGCCCTTGCTCACGCCAACATCCATGCAATCATCCACCGCAACATAACTGCCACTCGGCGGCTACTTGTCCGCCCTGTATGATGTTCACCACGAAATGGTGTTTCGGTCAACACGAGCAACGTAAAACCATTCCATGCTCACAGGAAAGTTTCAGTTGCGGTCTTGCCTGCAATAAACCACTGCCGTGCGGGCGTCACAAATGCATCAAATCATGTCATGAGGGTGCATGTGCAACTGTGGGAGAGGTGTGCAAGCAAAGTTGCACCACATTGCGTGCAGCCTGTGGACATAAGTGTATGGCGCCGTGCCATGATGCCGAGTGTCCAGAGACGCCATGCAAGGAAATGGTTGAAGTTCAATGTGAGTGCGGCAATCGTAAGCAGCAACGTTCGTGTCACGATTTGGCACGTGAATACAGTCGTATTGCCACTGCACAATTAGCCTCTTCGATGGCCGAAATGCAACGAGGCAACTATATGGAACTGAGCGAAATTTTGGCGCCTgtcaaaatgaataaaactaataaaacTCTTGATTGCAATGAAGAATGTCGTTTGTTGGATCGTAATCGTCGTCTTGCTATCGGTCTACAAATACGTAATCCCGATTTACCACAAAAGCTGATGACCAAATACTCTGATTTTATACGGAATTTTGCTAAACGTGATCCTCAATTGGTAAAATCAATACATGATGCTCTCACAAATCTGGTCAAATTAGCCAAGGAAAGTAAACAGAAATCACGCAGTCACTCGTTTCCCACAATGAATCGCGAGAAACGTCAATTGGTACATGAGATGTGTGAAATGTTTGGTGTTGAATCGGTTGCATACGATGCGGAACCGAATCGCAATGTTGTCGCTACGGCATATAAAGATAGATCATGGCTCCCAGCCAGCAGCATTGTGGATGTTATGCAACGTGAAGCTGGTCAACGCCGCGTCCCGGTACCCAGCAATAACGCCTGGGGTATTAAGAGatag
Protein Sequence
MSADSQSTHNTQTSFSLAQLWQGFSDIANAVAEGGGANNATAGTSISNNDSGSMINDAGGETSYTNNIIGSILNNQTFRQQQQQQSTNNSNNNNYVNFNQFIMQHNLLGGGGGSGGNGSSGLGRSNTSMPSTSVPAFNGTIGDIGGDNGGYMNFAQTSGNNETSSSNVMDNFQQPSNYINQNSNLFTYNDLYSSTTANNGTNNYNNTTTTGLNNYYDNVYTPFGNTGTTYFANPFATGFDFNASNLQATAPEFVPRFNNLTLDENINKINGDVTTKTTTNKTSTQHQQQLKDNMNFEQFLNNTETTAAQIDEKSKTGEGSGGGGVDGTTSGNFIMNNGLEKSPTTTTTQQTKSQQKYKNNNENNKQRYNGGGGGGGDRENFPSKTGSWRSNNDNNTSSSYNSPTNTGGGGGGGGSNSGMGRSTGATNRTSIRSDSRSSSTNGFSNNPGGYHGGSAAQHSSSNNNNGGGGNGGGEKFASGRAERERDRDNRRYQNGRRSVDYHRSNKRRDDWNRNRDRVNGFRVEEKYSTDNGKDSPLPSPEKKPSPKKIYPENEKLSQREKLIRDIEIRRLECLVCVEPIKFHHSAWSCNNCYHILHLQCIIKWASSSKSDDGWRCPACQNVVKEVPRDYYCFCGKVKNPTYNRQDIAHSCGDVCGRVEGCAHACTLLCHPGPCPPCQANVKRECGCGKTTKLMQCCLKESIECDFTCEKLLNCELHKCSAKCHDGKCAPCIEKVDQTCHCSKQERQVACTRDSHDKHTYSCGKPCGKDLSCTNHKCKDCCHAGECRPCKLSPEAVTSCPCGKMPVVQGQRNSCLDAIPVCEGVCGKTLRCGKAAHPHHCTSKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECCIEIDHICPLPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKKPICKRPCSRQHPCNHPPQHNCHSAATCPPCMMFTTKWCFGQHEQRKTIPCSQESFSCGLACNKPLPCGRHKCIKSCHEGACATVGEVCKQSCTTLRAACGHKCMAPCHDAECPETPCKEMVEVQCECGNRKQQRSCHDLAREYSRIATAQLASSMAEMQRGNYMELSEILAPVKMNKTNKTLDCNEECRLLDRNRRLAIGLQIRNPDLPQKLMTKYSDFIRNFAKRDPQLVKSIHDALTNLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVESVAYDAEPNRNVVATAYKDRSWLPASSIVDVMQREAGQRRVPVPSNNAWGIKR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01133401;
90% Identity
-
80% Identity
-