Tmul016282.1
Basic Information
- Insect
- Toxonevra muliebris
- Gene Symbol
- -
- Assembly
- GCA_963691655.1
- Location
- OY829328.1:40181180-40185616[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.042 3.4 9.0 1.4 2 23 213 235 212 235 0.94 2 17 0.035 2.8 9.2 3.5 3 19 278 294 277 297 0.93 3 17 0.17 14 7.0 0.0 3 23 339 360 338 360 0.94 4 17 0.083 6.6 8.0 0.9 3 23 368 388 366 388 0.94 5 17 0.00014 0.011 16.8 5.4 1 23 394 417 394 417 0.98 6 17 0.0069 0.55 11.4 2.6 1 23 422 444 422 444 0.98 7 17 0.0004 0.032 15.3 0.8 1 23 493 517 493 517 0.91 8 17 0.0093 0.74 11.0 2.4 1 23 522 544 522 544 0.98 9 17 0.0067 0.54 11.5 2.9 1 23 560 585 560 585 0.96 10 17 0.024 1.9 9.7 0.3 3 21 590 608 589 609 0.94 11 17 0.0011 0.089 13.9 3.1 1 23 616 639 616 639 0.97 12 17 0.0059 0.47 11.6 0.1 2 23 645 667 644 667 0.90 13 17 5.2e-05 0.0042 18.1 0.5 2 23 671 693 670 693 0.96 14 17 0.002 0.16 13.1 0.6 1 23 699 722 699 722 0.96 15 17 0.0067 0.54 11.5 0.2 1 23 727 749 727 749 0.98 16 17 2.9e-05 0.0023 18.9 0.3 1 23 755 777 755 777 0.99 17 17 0.027 2.2 9.6 0.3 1 23 783 811 783 811 0.85
Sequence Information
- Coding Sequence
- atgtcGCAGAACGCAGCCACTGAAACGCTGGTTTGTATACATTGCAGCCGGCAATCATCGCCAACAAATAGTGGCGATGAATTCCACGAGATCTTTGATGAAGTGGGACTTGAGTTGCAATTAGACAAATTGCTGGAAAAGTATTTTCGTTTGGAATTGCGTGCAGAAAATGTTCAAGGTCTGCAAGTGTTGTGTGATGATTGTATGAATCAGCTGATTGAATTGTTCGATGTTGATGAAAGCGCtaaggaaaaacaacaacagcaacacaacaATGAAGAAGTGCAAGATGCTGATGCAGAGGAAAATTCTGATGACATTGTTAAGCCATCGTGCGAGATGAGACTGAATGATATACAGGATGATGTAGTCATTGAAGGCACTGAAATTCCTTCAGTTGAGTTCGAGAATTTATGTAGTGATAATGTAGAAGAGAATGCCGTAGAAAACATAGAGGAAGAGCTATATGTTGAGGAATTATCTTATGCTTCCACGCATTTAGAAACTGAAGAAGctgATGAGCTTTTGGATACAGAAATATTATACGCCGATGATTTCGATGTTGTTGACATAGATGCGTATTTAGATGCAGTTATTAATAGCAaactagaaaaattaaattttcattggaaTTGTAAATGTAGAATTTGCTTGgcatattttaatacatttgaTGAACTTTTAAAACACATACTGATAAACCATAAGCAcgacaatatttttcattgtatgTTTAATGATTGTGTAGAAATGTTAaccaatgaaaaattaatggcCCGACATTTGATATTGAGACATAGCGATTTGAAAAGCTTACAGATTTACGGCAATTGTCCAGATTGtgatttgagattttcgaatttcatacatttcaataaacacTCATGTTATCGAACGCTAAAGCGTAAAGCGGGCATGCGGAATTATTGTAATAAATGTGAAATAGAATTTCCTTCTTTCAAACGATAcgtatttcatttacaattccACATGACTAAGCGTCGGCCAAAAATCTGTCTTATTTGCGAGCGTTTCTTTGCTGATGTAGGTGAATTTTTCGAGCATGTGCAATATGAACATGAACCAGAGGATACATTGGCATGCCTAAaatgTGATCGCATAttcaaagataaaaaagtaTACGATTCTCACAGTAGAAATCATcagcttaaatttaaatatcaatgCAACTATTGCACGAAAACCTATGATCACAAGCATTTACTAATAACTCACATAGATACCTATCACAAAACGATGGAATTTCGTTGCGATATTTGCAATAAAGTATTAGCTAATGCTCCCAACCATCACAAACACATGAAGAGTCATGTAACCGAGACAGAAGTACAAGCTTATCTATGCGTGCAGTGTGGTCTCATTGCCAGAGATAGAGAGGATATAGTGGAGCACATTGAATGTGCCCAATCGAACTGTTTGGAATCCAGCATTCAAAAGGAAATACTCAATAAAGCATACACTTGTGAGTATTGTTCGTTGAATTTTAAAAGCACCACTGACTTAAAAGCTCATCGTGCCACTGCTACACACGCTGACAATATGTACGAGTGTCCTCtgtgtaaagaaaaatatacggAATATAAAAAGATGCGCAATCACACAAAATCGCATATGACGTATGAATCGTGGCTAATAGGATTTCCGATCAATAGATTATTTATGTGTAATATAAAGAATTGTGAGAAAACTTATGCACAATGGTCTGCAATGTATCATCATAAACGTCGCTTTCACAAGCAGCTGCTATGTACCTTatgcaatcaaatttttttcaatcaagaAGAACTTGAATCACATAAAAATTCATGTAAACAGCAGTTGGAATATAAATGCCAATTCTGCAACAAAGAATGTACATCAAAAATGTCTTTGTCCGTCCATATTGCAAGAAGTCATAATAACAAAAATCTTGTATGCCCAACATGTAAAGGTTCCTATAAAGATGAGGAAGCATTACAGAAACATATTGATTTTATGCACGTGCCCATACAATGTTCTCAATGCGATAAAGTCATCAAAAACAAACGTAACCTTCAAACACATGAGCGTGTAGTACATAAAAATGAGCAACGCTATTTTTGTCGAGTATGCAATAAAGGATActataataaaagtgaaatggTGGCGCATGAgagatatGTGCATACAGATATTCTTTATAACTGCTCAGAATGTGCATTCTcaacaaattatgcaaaatctTTGGAAGTTCACATGGCCATGCATCGCAAagaattaaaatacaaatgccCAATTTGTGCTAAGGAATTTGGGCGTAAAAATGTGCTTAATTTACATATAAGACGCCATGATTCGAACAGATTatttgtaTGCTCACAACGAATTTTAAATGGCTGTGCCTCTTCATTTGTTACAAACTATTTGCTTAATAAgcatattaaagaaaaacatagCAAGTTGAAAGCGAACAGCTATATTGATTCTAAAGTGAAACGTTTAAGAAGCTTAAATAAGTCAAGACAACTGGAATCAATCGACGAAGATGTTGACGGTGATGTCGATAATCCAGAAAAATTCGTTACGAACGAAAGTTTAATTGAAGTTGAAAATGGCATGGATGAAAattgtattgattttatattagaAGATGAAGAAAATACGCAAAATGATGATTgcattattgaaattattgaagaaaatgTGCCATAA
- Protein Sequence
- MSQNAATETLVCIHCSRQSSPTNSGDEFHEIFDEVGLELQLDKLLEKYFRLELRAENVQGLQVLCDDCMNQLIELFDVDESAKEKQQQQHNNEEVQDADAEENSDDIVKPSCEMRLNDIQDDVVIEGTEIPSVEFENLCSDNVEENAVENIEEELYVEELSYASTHLETEEADELLDTEILYADDFDVVDIDAYLDAVINSKLEKLNFHWNCKCRICLAYFNTFDELLKHILINHKHDNIFHCMFNDCVEMLTNEKLMARHLILRHSDLKSLQIYGNCPDCDLRFSNFIHFNKHSCYRTLKRKAGMRNYCNKCEIEFPSFKRYVFHLQFHMTKRRPKICLICERFFADVGEFFEHVQYEHEPEDTLACLKCDRIFKDKKVYDSHSRNHQLKFKYQCNYCTKTYDHKHLLITHIDTYHKTMEFRCDICNKVLANAPNHHKHMKSHVTETEVQAYLCVQCGLIARDREDIVEHIECAQSNCLESSIQKEILNKAYTCEYCSLNFKSTTDLKAHRATATHADNMYECPLCKEKYTEYKKMRNHTKSHMTYESWLIGFPINRLFMCNIKNCEKTYAQWSAMYHHKRRFHKQLLCTLCNQIFFNQEELESHKNSCKQQLEYKCQFCNKECTSKMSLSVHIARSHNNKNLVCPTCKGSYKDEEALQKHIDFMHVPIQCSQCDKVIKNKRNLQTHERVVHKNEQRYFCRVCNKGYYNKSEMVAHERYVHTDILYNCSECAFSTNYAKSLEVHMAMHRKELKYKCPICAKEFGRKNVLNLHIRRHDSNRLFVCSQRILNGCASSFVTNYLLNKHIKEKHSKLKANSYIDSKVKRLRSLNKSRQLESIDEDVDGDVDNPEKFVTNESLIEVENGMDENCIDFILEDEENTQNDDCIIEIIEENVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -